Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001530-TA|BGIBMGA001530-PA|IPR003931|Calcium-activated
SK potassium channel, IPR011996|SK channel region, IPR013099|Ion
transport 2, IPR004178|Calmodulin-binding
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1066 - 8656108-8657622 35 0.23
01_06_0369 - 28794283-28794427,28794865-28795874 33 0.54
03_05_1156 - 30814037-30814190,30814277-30815166 32 1.3
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 32 1.3
01_06_0908 + 32900501-32900890,32901804-32901995 31 2.2
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 31 2.2
09_02_0327 - 7284829-7284889,7284946-7286126 30 5.1
06_01_0740 - 5473895-5474061,5474153-5474399,5475207-5475336,547... 30 5.1
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766 29 8.8
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 29 8.8
03_02_0312 - 7326092-7326148,7326415-7326540,7327744-7327821,732... 29 8.8
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 8.8
>06_01_1066 - 8656108-8657622
Length = 504
Score = 34.7 bits (76), Expect = 0.23
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 351 FGDIVPNTYCGRGIAVSTGIMGAGCTALLVAV-VSRKLELTRAEKHVHNFMMDTQLT 406
F D+V N + RG + + G GC+A L+AV V+R L A + H ++ T+ T
Sbjct: 199 FADMVVNRFKLRGDVRAVHLSGMGCSAGLIAVEVARNLLQAAAPRGAHALVVSTETT 255
>01_06_0369 - 28794283-28794427,28794865-28795874
Length = 384
Score = 33.5 bits (73), Expect = 0.54
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 274 HDEDHANLLNSMWLTAITFLCVGYGDIVPNTYCGRGITLTCGMVASQGLL-LIMVLTKLA 332
H+ + N ++S +L+ I+ VGYGD +T GR C +V++ + + LT L
Sbjct: 245 HEVEGLNWIDSFYLSVISVTTVGYGDYGFSTPAGRLSATVCLLVSTLAVAKAFLFLTDLR 304
Query: 333 LSR 335
+ R
Sbjct: 305 MDR 307
Score = 31.9 bits (69), Expect = 1.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 251 VLLVFMVSLWIIASWTLRQCERFHDEDHANLLNSMWLTAITFLCVGYGDIVPNT 304
V ++ +S+ ++ T E F L++ ++ T I+ +GYGDIVP T
Sbjct: 107 VSVILYISIGVLVYIT--NVEGFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCT 158
>03_05_1156 - 30814037-30814190,30814277-30815166
Length = 347
Score = 32.3 bits (70), Expect = 1.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 344 ITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVS 384
+T +VG+GD+VPN + +A + MG AL V+ V+
Sbjct: 106 VTMTTVGYGDLVPNNDTTKLLACAFVFMGMAVVALFVSKVA 146
Score = 31.5 bits (68), Expect = 2.2
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 281 LLNSMWLTAITFLCVGYGDIVPNTYCGRGITLTCGMVASQGLLLIMVLTKLA 332
+L++++ +T VGYGD+VPN + L C V ++ + ++K+A
Sbjct: 97 VLDALYFCVVTMTTVGYGDLVPNNDTTK--LLACAFVFMGMAVVALFVSKVA 146
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 32.3 bits (70), Expect = 1.3
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 491 KVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTSLEEKLTTLQEQVNS 550
++K +RK+ + + M+K + +D + L LEE+LTT + Q+ +
Sbjct: 784 RLKALERKIKSLKSELQSMSKQLKAHESERERLIMEKDAVANELAMLEEQLTTSKAQIAA 843
Query: 551 LPDVMARHR 559
+ + + RH+
Sbjct: 844 MTETLNRHQ 852
>01_06_0908 + 32900501-32900890,32901804-32901995
Length = 193
Score = 31.5 bits (68), Expect = 2.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 574 KSNAVSVTSVAPESGAATVSTNPLGSREHDSSLSNTSPAAAF 615
K V S AP +T NP+G HD++ N S ++AF
Sbjct: 129 KKVLVVQASEAPNDLRSTAQANPVGENTHDATKRNASESSAF 170
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 31.5 bits (68), Expect = 2.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 574 KSNAVSVTSVAPESGAATVSTNPLGSREHDSSLSNTSPAAAF 615
K V S AP +T NP+G HD++ N S ++AF
Sbjct: 915 KKVLVVQASEAPNDLRSTAQANPVGENTHDATKRNASESSAF 956
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 30.3 bits (65), Expect = 5.1
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 344 ITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVA-VVSRKLEL 389
+T ++G+GDI P T + ++S ++G G +L++ +VS L+L
Sbjct: 199 VTLCTIGYGDITPATPAAKLFSISFVLIGFGFVDILLSGMVSYVLDL 245
>06_01_0740 -
5473895-5474061,5474153-5474399,5475207-5475336,
5475874-5475951,5476192-5476337,5476661-5476906,
5477498-5477746,5478356-5478493,5479015-5479113,
5479456-5479641,5480477-5480896
Length = 701
Score = 30.3 bits (65), Expect = 5.1
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 416 LVTVASRKLELTRAEKHVHNFMMETQLTKKLKNAAANVLRETWLIYK---HTRLVKRVHP 472
L + R+LE+ + V +M +L + L+ + R +W+ + L+ + P
Sbjct: 489 LQALGKRRLEMQLRRRDVEQWMSHRRLPEDLRRRVRSAERFSWVATRGVNEEELLSNL-P 547
Query: 473 GRVRTHQRKFLLAIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEE 532
++ R+ L+KV++ LMDNA K + +Y SD+ + +E+
Sbjct: 548 EDIQRGIRRHFFGF--LKKVRL--FNLMDNATWDAICDKLRQNLYITGSDILYQGGPVEK 603
Query: 533 RLTSLEEKLTTLQEQVNSLP 552
+ + +L ++ N P
Sbjct: 604 MVFIVRGRLESISADGNKSP 623
>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
Length = 943
Score = 29.5 bits (63), Expect = 8.8
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 377 ALLVAVVSR-KLEL-TRAEKHVHNFMMDTQLTKRGAGCTALLVTV-ASRKLELTRAEKHV 433
A L A VSR + EL T+AE+ + +L +G A L ASRK ++ RAE+ +
Sbjct: 213 ATLAAEVSRLQSELETKAEEAT---AIVAKLESEASGLRAELQNAEASRKEDVGRAEQLL 269
Query: 434 HNFMMETQLTKKLKNAAANVLRETWLIYKHTRLVKRVH 471
H ++ K+ + A AN+ + W K L R+H
Sbjct: 270 HGLKVDIAYAKRAE-ADANLAAQEWKT-KAESLQARLH 305
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 29.5 bits (63), Expect = 8.8
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 450 AANVLRETWLIYKHTRLVKRVHP---GRVRTHQRKFLLAIYALRKVKMDQRKLMDNANTI 506
A N+L W +YK R ++ + P T Q + L+ I L V+ D R D +
Sbjct: 294 ADNLLDHAWRLYKKGRSIELLDPAVKSAAATEQVELLVRI-GLLCVQADPRMRPDMKRVV 352
Query: 507 TDMAKTQNTVYE 518
++K Q+T+ E
Sbjct: 353 IILSKKQSTLEE 364
>03_02_0312 -
7326092-7326148,7326415-7326540,7327744-7327821,
7327916-7328178,7328699-7328741,7329581-7329632,
7329705-7329871,7330135-7330194,7330291-7330374,
7330654-7330758,7330840-7330899,7330976-7331032
Length = 383
Score = 29.5 bits (63), Expect = 8.8
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 485 AIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTSLEEKLTTL 544
AI R++K +RK + + + Q E+ + R D +++ +SL+E+L L
Sbjct: 295 AIQDERELKRQKRKQSNRESARRSRLRKQAEWEEVAN----RADLLKQENSSLKEELKQL 350
Query: 545 QEQVNSL 551
QE+ NSL
Sbjct: 351 QEKCNSL 357
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.5 bits (63), Expect = 8.8
Identities = 14/41 (34%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 509 MAKTQNTVYEIVSDMSTRQDTIEERLTSLEEKLTTLQEQVN 549
M + Q+ + E+ S M+ ++D ++E+L E+K T+L+E++N
Sbjct: 1752 MNRYQSLMLELES-MTKQRDDLQEKLGQEEQKCTSLREKLN 1791
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,175
Number of Sequences: 37544
Number of extensions: 613974
Number of successful extensions: 1655
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 24
length of query: 655
length of database: 14,793,348
effective HSP length: 87
effective length of query: 568
effective length of database: 11,527,020
effective search space: 6547347360
effective search space used: 6547347360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)
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