Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001530-TA|BGIBMGA001530-PA|IPR003931|Calcium-activated
SK potassium channel, IPR011996|SK channel region, IPR013099|Ion
transport 2, IPR004178|Calmodulin-binding
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02510.1 68414.m00202 outward rectifying potassium channel, p... 37 0.048
At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containi... 36 0.11
At5g55630.2 68418.m06937 outward rectifying potassium channel (K... 35 0.20
At5g55630.1 68418.m06936 outward rectifying potassium channel (K... 35 0.20
At1g22060.1 68414.m02759 expressed protein 33 0.60
At4g28230.1 68417.m04045 expressed protein 32 1.0
At4g18160.1 68417.m02698 outward rectifying potassium channel, p... 32 1.0
At3g26680.2 68416.m03336 DNA cross-link repair protein-related c... 32 1.4
At3g26680.1 68416.m03335 DNA cross-link repair protein-related c... 32 1.4
At5g46370.1 68418.m05707 outward rectifying potassium channel, p... 31 1.8
At4g34590.1 68417.m04914 bZIP transcription factor family protei... 31 1.8
At4g15870.1 68417.m02412 terpene synthase/cyclase family protein 31 1.8
At3g52240.1 68416.m05741 expressed protein 31 1.8
At1g10880.1 68414.m01250 expressed protein contains Pfam profile... 31 1.8
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 31 2.4
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 30 4.2
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 29 7.4
At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1 (... 29 9.7
>At1g02510.1 68414.m00202 outward rectifying potassium channel,
putative (KCO4) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 284
Score = 36.7 bits (81), Expect = 0.048
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 250 TVLLVFMVSLWIIASWTLRQCERFHDE---DHANL-LNSMWLTAITFLCVGYGDIVPNTY 305
T+L++ M+ L + ++ + F D+ NL +++ + + +TF VGYGDIVP+T
Sbjct: 33 TILVLAMILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTS 92
Query: 306 CGRGITLTCGMVASQGLLLIMVLTKLALSREFHCAGKAI 344
+ +T+ ++ S G++ + L +S AI
Sbjct: 93 TTKILTI---VLVSTGVVFLDYLLNRVVSHVLSLQENAI 128
Score = 29.9 bits (64), Expect = 5.6
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 344 ITFLSVGFGDIVPNTYCGR---GIAVSTGIMGAGCTALLVAVVSRKLEL 389
+TF +VG+GDIVP+T + + VSTG++ LL VVS L L
Sbjct: 77 VTFSTVGYGDIVPSTSTTKILTIVLVSTGVV--FLDYLLNRVVSHVLSL 123
Score = 29.5 bits (63), Expect = 7.4
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 274 HDEDHANLLNSMWLTAITFLCVGYGDIVPNTYCGRGITLTCGMVASQGL-LLIMVLTKLA 332
H + + L+S++L+ I+ VGYGD T GRG + ++++ + L + L ++
Sbjct: 175 HVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGRGFAVFWLLLSTIAMATLFLYLAEMR 234
Query: 333 LSR 335
+ R
Sbjct: 235 IDR 237
>At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 629
Score = 35.5 bits (78), Expect = 0.11
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 88 ENELSSAGVYTKASIYSQALKTLISMSTVILLGLIVAYHALEVQLFMIDNCADDWRIAMT 147
EN+L A +YT+ S+YS T+ +++TV+ L A + +QL N A +T
Sbjct: 108 ENDLEEAALYTRHSVYSNCRPTIFTVNTVLAAQLRQAKYGALLQLHGFINQAGIAPNIIT 167
Query: 148 WQRIAQIGLEL 158
+ I Q L++
Sbjct: 168 YNLIFQAYLDV 178
>At5g55630.2 68418.m06937 outward rectifying potassium channel
(KCO1) identical to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158 of the 2 pore, 4 transmembrane
(2P/4TM) K+ channel family, PMID:11500563
Length = 363
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 279 ANLLNSMWLTAITFLCVGYGDIVPNTYCGRGITLTCGMVASQGLLLIMVLTKLA 332
+ ++++++ +T VGYGD+VPN+ R L C V S +L+ +L++ A
Sbjct: 107 SGVVDALYFCIVTMTTVGYGDLVPNSSASR--LLACAFVFSGMVLVGHLLSRAA 158
>At5g55630.1 68418.m06936 outward rectifying potassium channel
(KCO1) identical to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158 of the 2 pore, 4 transmembrane
(2P/4TM) K+ channel family, PMID:11500563
Length = 363
Score = 34.7 bits (76), Expect = 0.20
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 279 ANLLNSMWLTAITFLCVGYGDIVPNTYCGRGITLTCGMVASQGLLLIMVLTKLA 332
+ ++++++ +T VGYGD+VPN+ R L C V S +L+ +L++ A
Sbjct: 107 SGVVDALYFCIVTMTTVGYGDLVPNSSASR--LLACAFVFSGMVLVGHLLSRAA 158
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 33.1 bits (72), Expect = 0.60
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 467 VKRVHPGRVRTHQRKFLLAIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTR 526
+K++H V+ K + LR+++++ +MD IT+ + + + D+ +R
Sbjct: 992 LKQMHENDVQCMVTKLEASTALLRRLQLETESVMDKMKVITEDEQNYESRH---LDLLSR 1048
Query: 527 QDTIEERLTSLEEKLTTLQEQVNSLPDVMARHRR 560
D E + L K L ++++ L V H R
Sbjct: 1049 LDHFENEMHLLVSKNEGLGQEISELSSVAVEHGR 1082
>At4g28230.1 68417.m04045 expressed protein
Length = 402
Score = 32.3 bits (70), Expect = 1.0
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 404 QLTKRGAGCTALLVTVASRKLELTRAEKHVHNFMMETQLTKKLKNAAANVLRETWL--IY 461
Q+T RG G T+L ++ SRK ++T A+K + + KK + + +
Sbjct: 208 QVTTRGKGRTSLSLSPRSRKAKMTAAQKQAATTVGSKRAVKKEEGVLLTIQPKRLFKEDE 267
Query: 462 KHTRLVKRVHPGRV 475
K+ L K + PGRV
Sbjct: 268 KNVSLRKPLKPGRV 281
>At4g18160.1 68417.m02698 outward rectifying potassium channel,
putative (KCO6) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 436
Score = 32.3 bits (70), Expect = 1.0
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 252 LLVFMVSLWIIASWTLRQCERFHDEDHANLLNSMWLTAITFLCVGYGDIVPNT 304
LLV +SL ++ W L + ++ H +++ ++ +T +GYGDI PN+
Sbjct: 156 LLVVYLSLGVLIYW-LNRDHYVVNQTHP-VVDGLYFCIVTMCTIGYGDITPNS 206
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 344 ITFLSVGFGDIVPNTYCGRGIAVSTGIMGAG-CTALLVAVVSRKLEL 389
+T ++G+GDI PN+ + ++ ++G G LL +VS L+L
Sbjct: 192 VTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDL 238
>At3g26680.2 68416.m03336 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 484
Score = 31.9 bits (69), Expect = 1.4
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 584 APESGAATVSTNPLGSREHDSSLSNTSPAAAFKPC 618
+P S +A +T+ LG R DSS SN SP +PC
Sbjct: 115 SPASNSAKKTTSALGKRRRDSSFSNDSP----RPC 145
>At3g26680.1 68416.m03335 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 484
Score = 31.9 bits (69), Expect = 1.4
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 584 APESGAATVSTNPLGSREHDSSLSNTSPAAAFKPC 618
+P S +A +T+ LG R DSS SN SP +PC
Sbjct: 115 SPASNSAKKTTSALGKRRRDSSFSNDSP----RPC 145
>At5g46370.1 68418.m05707 outward rectifying potassium channel,
putative (KCO2) identical to KCO2 protein [Arabidopsis
thaliana] gi|6686780|emb|CAB64717; similar to kco1
[Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
family, PMID:11500563
Length = 443
Score = 31.5 bits (68), Expect = 1.8
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 252 LLVFMVSLWIIASWTLRQCERFHDEDHANLLNSMWLTAITFLCVGYGDIVPNT 304
LLV +SL ++ W R + ++ + ++++++ +T +GYGDI P++
Sbjct: 152 LLVVYLSLGVLIYWLNR--DSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDS 202
>At4g34590.1 68417.m04914 bZIP transcription factor family protein
similar to common plant regulatory factor 7 GI:9650828
from [Petroselinum crispum]
Length = 159
Score = 31.5 bits (68), Expect = 1.8
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 490 RKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMS-TRQD--TIEERLTSLEEKLTTLQE 546
R+ +M ++KL+D+ + K +NT EIV+ +S T Q T+E + L +L L
Sbjct: 40 RRSRMKKQKLLDDLTAQVNHLKKENT--EIVTSVSITTQHYLTVEAENSVLRAQLDELNH 97
Query: 547 QVNSLPDVM 555
++ SL D++
Sbjct: 98 RLQSLNDII 106
>At4g15870.1 68417.m02412 terpene synthase/cyclase family protein
Length = 598
Score = 31.5 bits (68), Expect = 1.8
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 490 RKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTSLEEKLTTLQEQVN 549
++ K + K M++ IT K ++YE +TR+D +EE L+ L +L
Sbjct: 186 KRFKGENEKFMES---ITSDVKGMVSLYEAAHLRTTREDILEEALSFTTRNLESLARAGA 242
Query: 550 SLPDVMARHR 559
S P ++ R R
Sbjct: 243 SSPHILMRIR 252
>At3g52240.1 68416.m05741 expressed protein
Length = 680
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 512 TQNTVYEI----VSDMSTRQDTIEERLTSLEEKLTTLQEQVNSL 551
T T++E+ VS + DT E LT+L++ +LQE+VNSL
Sbjct: 401 TTTTIHEVDDPLVSVKDVKPDTCETVLTALKQAKLSLQEKVNSL 444
>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 651
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 490 RKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTSLEEKLTTL 544
+K++ +RK+ N I M KT I++ M +TI T LE+K+T L
Sbjct: 597 KKIESRERKIKKTENEIKSMRKTME---RILNRMHKALETISHERTCLEKKITIL 648
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 421 SRKLELTRAEKHVHNFMMETQLTKKL---KNAAANVLRETWLIYKHTRLVKRVHPGRVRT 477
++K E +A+ + ++ + T+ L + AA + ET I K +V + ++
Sbjct: 917 AKKQESAKAQSSLEELQLKCKETEALLIKEREAAKKIAETAPIIKEIPVVDQELMDKITN 976
Query: 478 HQRKFLLAIYALR-KVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTS 536
K + +L K+ ++KL + D + + T +EE++
Sbjct: 977 ENEKLKSMVSSLEMKIGETEKKLQETTKISQDRLNQALEAESKLVKLKTAMQRLEEKILD 1036
Query: 537 LEEKLTTLQEQVNSLP 552
+E + + +Q S P
Sbjct: 1037 MEAEKKIMHQQTISTP 1052
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 489 LRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTSLEEKLTTLQEQV 548
+++++ KL D ITD+ + T+ V+ + E+RL S+EE+++ +++V
Sbjct: 351 MKQLEGSNDKLHDTETEITDLKERIVTLETTVAKQKEDLEVSEQRLGSVEEEVSKNEKEV 410
Query: 549 NSL 551
L
Sbjct: 411 EKL 413
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 29.5 bits (63), Expect = 7.4
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 425 ELTRAEKHVHNFMMETQLTKKLKNAAANVLRETWLIYKHTRLVKRVHPGRVRTHQRKFLL 484
+L + + + L + K N+LR+TW +L R V T +K ++
Sbjct: 848 DLCEVKHELEGSLKSVSLLLQQKQNEVNMLRKTW-----EKLTARQILTAVETESKKMMI 902
Query: 485 AIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTSLEEKLTTL 544
+ Q+ ++ +N + + T +++ T+Q ++E T ++EKL T
Sbjct: 903 IELEGEISSLSQK--LETSNESVSCFRQEATKSR--AELETKQTELKEVTTQMQEKLRTS 958
Query: 545 QEQVNSL 551
+ + L
Sbjct: 959 EAEKTEL 965
>At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1
(ERO1) family protein contains Pfam domain, PF04137:
Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Length = 478
Score = 29.1 bits (62), Expect = 9.7
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 464 TRLVKRV--HPGRVRTHQRKFLLAIYALRKVKMDQRKL-MDNANTITDMAKTQNTVYEIV 520
T L RV +P RV+ FL + A+ KVK + + N I D+ KT++ V ++V
Sbjct: 269 TLLYDRVLRYPDRVQNLYFTFLFVLRAVTKVKDYLGEAEYETGNVIEDL-KTKSLVKQVV 327
Query: 521 SDMSTR 526
SD T+
Sbjct: 328 SDPKTK 333
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,661
Number of Sequences: 28952
Number of extensions: 478442
Number of successful extensions: 1287
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 30
length of query: 655
length of database: 12,070,560
effective HSP length: 86
effective length of query: 569
effective length of database: 9,580,688
effective search space: 5451411472
effective search space used: 5451411472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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