BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001529-TA|BGIBMGA001529-PA|undefined (324 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 30 0.51 SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 29 0.89 SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 27 3.6 SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 8.3 SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 8.3 >SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Schizosaccharomyces pombe|chr 2|||Manual Length = 300 Score = 29.9 bits (64), Expect = 0.51 Identities = 15/27 (55%), Positives = 16/27 (59%) Query: 272 TEATGDTVTYVKTVGFCSIMHRQSHIG 298 TEAT D + KTV SI RQ HIG Sbjct: 53 TEATLDALLLTKTVDLASIKARQLHIG 79 >SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 965 Score = 29.1 bits (62), Expect = 0.89 Identities = 13/34 (38%), Positives = 19/34 (55%) Query: 247 PFKQGLLLCPQTLSQTRRARLRRAFTEATGDTVT 280 PF + L PQT +T + +R A TE T +V+ Sbjct: 132 PFSESSTLQPQTAERTSQQAVRSAITETTNPSVS 165 >SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import complex anchor subunit Tim18|Schizosaccharomyces pombe|chr 2|||Manual Length = 186 Score = 27.1 bits (57), Expect = 3.6 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 102 PQTLVSPMAGCSH--RGSVTACTLVPHSHSRCRVC 134 PQ ++ G SH + ACTL+ H+H C Sbjct: 100 PQVMIPLFTGTSHPLMDAALACTLITHAHLGFESC 134 >SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 715 Score = 25.8 bits (54), Expect = 8.3 Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 167 CSSLHAVSTCPVIQPPALLLPTT 189 CSS H +S P IQP A P + Sbjct: 167 CSSKHQLSVTPEIQPKAKFRPNS 189 >SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 780 Score = 25.8 bits (54), Expect = 8.3 Identities = 12/38 (31%), Positives = 23/38 (60%) Query: 6 IDSTEAITILDMGSSDETASLPGRRTRPLPVIVPSENR 43 +++ + +T LD+ + +T +L G LP + PSE+R Sbjct: 335 VEAAQVLTDLDVYFTYKTFALRGTPVNELPNLDPSESR 372 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.321 0.133 0.403 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,184,553 Number of Sequences: 5004 Number of extensions: 38638 Number of successful extensions: 73 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 5 length of query: 324 length of database: 2,362,478 effective HSP length: 73 effective length of query: 251 effective length of database: 1,997,186 effective search space: 501293686 effective search space used: 501293686 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 54 (25.8 bits)
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