GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001529-TA|BGIBMGA001529-PA|undefined
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    30   0.51 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    29   0.89 
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    27   3.6  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   8.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   8.3  

>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 272 TEATGDTVTYVKTVGFCSIMHRQSHIG 298
           TEAT D +   KTV   SI  RQ HIG
Sbjct: 53  TEATLDALLLTKTVDLASIKARQLHIG 79


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 247 PFKQGLLLCPQTLSQTRRARLRRAFTEATGDTVT 280
           PF +   L PQT  +T +  +R A TE T  +V+
Sbjct: 132 PFSESSTLQPQTAERTSQQAVRSAITETTNPSVS 165


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 102 PQTLVSPMAGCSH--RGSVTACTLVPHSHSRCRVC 134
           PQ ++    G SH    +  ACTL+ H+H     C
Sbjct: 100 PQVMIPLFTGTSHPLMDAALACTLITHAHLGFESC 134


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 167 CSSLHAVSTCPVIQPPALLLPTT 189
           CSS H +S  P IQP A   P +
Sbjct: 167 CSSKHQLSVTPEIQPKAKFRPNS 189


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 6   IDSTEAITILDMGSSDETASLPGRRTRPLPVIVPSENR 43
           +++ + +T LD+  + +T +L G     LP + PSE+R
Sbjct: 335 VEAAQVLTDLDVYFTYKTFALRGTPVNELPNLDPSESR 372


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,184,553
Number of Sequences: 5004
Number of extensions: 38638
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 5
length of query: 324
length of database: 2,362,478
effective HSP length: 73
effective length of query: 251
effective length of database: 1,997,186
effective search space: 501293686
effective search space used: 501293686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)