GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001529-TA|BGIBMGA001529-PA|undefined
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0185 - 13565903-13565932,13565933-13566013,13566104-135661...    30   2.2  

>01_03_0185 -
           13565903-13565932,13565933-13566013,13566104-13566175,
           13566800-13566932,13567068-13567107,13567192-13567258,
           13567453-13567719
          Length = 229

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 228 GDGIAGIAADSLRINGGMRPFKQG 251
           G G  G AA SL + GGM+ F+QG
Sbjct: 67  GGGAGGAAAASLAVRGGMQLFRQG 90


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,444,264
Number of Sequences: 37544
Number of extensions: 301749
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 1
length of query: 324
length of database: 14,793,348
effective HSP length: 82
effective length of query: 242
effective length of database: 11,714,740
effective search space: 2834967080
effective search space used: 2834967080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)