GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001529-TA|BGIBMGA001529-PA|undefined
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.73 
SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 2   SAPTIDSTEAITILDMGSSDETASLPGRRTRPLPVIVPSENR 43
           S PT+   +    LDMG+S++    P RR+  LP + P  +R
Sbjct: 659 SLPTLKIVDVFGGLDMGTSNKQLPRPHRRSTSLPSLSPDSSR 700


>SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 5   TIDSTEAITILDMGSSDETASLPGRRTRPLPVIVP 39
           ++ +T+ + +    +S E ASLP   T P+P I P
Sbjct: 116 SVGTTQTLAVTTCSTSLELASLPTSATTPIPQIPP 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,629,496
Number of Sequences: 59808
Number of extensions: 340683
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 2
length of query: 324
length of database: 16,821,457
effective HSP length: 82
effective length of query: 242
effective length of database: 11,917,201
effective search space: 2883962642
effective search space used: 2883962642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)