GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001529-TA|BGIBMGA001529-PA|undefined
         (324 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13550.1 68415.m01494 expressed protein                             29   5.6  
At1g20560.1 68414.m02563 AMP-dependent synthetase and ligase fam...    28   7.4  

>At2g13550.1 68415.m01494 expressed protein 
          Length = 181

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 12  ITILDMGSSDETASLPGRRTRPLPVIVPSENRTVK 46
           +T  D+ S+D+T S  G +++P P I P   +++K
Sbjct: 89  VTNTDIASTDKTRSRSGNQSKPQPHIQPKLKQSLK 123


>At1g20560.1 68414.m02563 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to adenosine monophosphate binding
           protein 1 AMPBP1 (AMPBP1) GI:20799710
          Length = 556

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 75  IRMEEGTARSVPDIELQCRDTVPHADRPQTLV 106
           +++++G+  S  ++   CRD +PH   P+++V
Sbjct: 490 VKLKDGSKASAEELISYCRDRLPHYMAPRSIV 521


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,379,401
Number of Sequences: 28952
Number of extensions: 216696
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 2
length of query: 324
length of database: 12,070,560
effective HSP length: 81
effective length of query: 243
effective length of database: 9,725,448
effective search space: 2363283864
effective search space used: 2363283864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)