GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001528-TA|BGIBMGA001528-PA|IPR000980|SH2 motif
         (665 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   6.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   6.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 347 QEPASETSDNNKNNNSQK 364
           +E   E SD+N NNN ++
Sbjct: 452 EEAKKEESDSNNNNNKEE 469


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 625 GASTAFPSVPALMRHYVTAQRLPVRGAEHMALSTPLP 661
           G  T    VP  + +   A  LP +GA  + L  P+P
Sbjct: 167 GNGTGVQLVPTRLANGDIALVLPTQGASPLPLLVPIP 203


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,059
Number of Sequences: 317
Number of extensions: 4188
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 665
length of database: 114,650
effective HSP length: 61
effective length of query: 604
effective length of database: 95,313
effective search space: 57569052
effective search space used: 57569052
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)