Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001528-TA|BGIBMGA001528-PA|IPR000980|SH2 motif
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 30 0.90
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 30 1.2
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 30 1.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 2.1
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 4.8
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 28 4.8
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 27 6.3
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 27 6.3
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 27 8.4
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 30.3 bits (65), Expect = 0.90
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 333 AKLNILSPISDKSSQEPASETSDNNKNNNSQKVSPEEGDTGNATIQTAVEIIAKP 387
A I+ P+S + P S N +N+Q+ P T N+T++ A + +P
Sbjct: 275 ASTKIVRPVSAAQTVRPGSRIFRENSASNTQR--PNVSATSNSTVRVASSLAVRP 327
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 344 KSSQEPASETSDNNKNNNSQKVSPEEGDTGNATIQTAVE 382
K EPA E K + S K P++ GN T+Q V+
Sbjct: 229 KRKTEPAGEGEQTEKKSKSTKTYPKQVLEGNVTVQDKVK 267
>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 566 YHGTLARVEAESLLRDADEGAFLVRNSESAKHDYSLSL-KSTRGFMHMRI 614
Y TLA + ESLLRD+ + A ++ ++A+ Y+L L + ++ RI
Sbjct: 183 YVSTLAHPQTESLLRDSSQLALNMQLEDTAQSWYTLDLWQGRHSLLYSRI 232
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 59 DFKGRRKVTMKTDSVRRSKIPTIRQKRENENNACALSEELEKVHIEGEERVASNS 113
DF + K S RR P +RQ R+ +N EE+E + I + V+ S
Sbjct: 723 DFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLS 777
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 339 SPISDKSSQEPASETSD--NNKNNNSQKVSPEEGDTGNATIQTAVEIIAKPKXXXXXXXX 396
S S S E +SE +D ++ +++ + S E+ D+ +++ + E +K
Sbjct: 219 SSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSD 278
Query: 397 XXXXTFRHSATGDAEIQGSDSGISIHSREGVDSRNAFINFKNSNT 441
+ S+ ++E DS + S + S ++ N++T
Sbjct: 279 SEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDT 323
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 339 SPISDKSSQEPASETSDNNKNNNSQKVSPEEGDTGNATIQTAVE 382
SPI S+ PA+ T D+++ NN + G T A ++ A +
Sbjct: 5 SPILPLSNNPPAARTHDHSQRNNHARHVSSSGTTLFAPVKPATK 48
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 51 EAVERSEPDFKGRRKVTMKTDSVRRSKIPTIRQKRENENN 90
E E EP + TM+ + KIP + +KR+N+ +
Sbjct: 143 ETAEVQEPQIVSDEEYTMEEEVAEPVKIPVLAKKRKNKKS 182
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/112 (16%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 316 PFSKSHHMQLGFGHHHPAKLNILSPISDKSSQEPASETSDNNKNNNSQKVSPEEGDTGNA 375
P KS+ + + + ++ S K+S++ +S+ N+K+ ++Q S + T +
Sbjct: 168 PLGKSYRPKASRTTSSQSVASTMTKSSTKTSKKKSSKK--NSKSESNQDSSNDRSSTAPS 225
Query: 376 TIQTAVEIIAKPKXXXXXXXXXXXXTFRHSATGDAEIQGSDSGISIHSREGV 427
T ++ E ++ + T H A + GI ++ ++ +
Sbjct: 226 TAESNNEHLSSSQKSKHSIVFMAEQTSHHPAVSAFYVTCPSKGIEVYGQDQI 277
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 614 ICRG-AEGYTLGGASTAFPSVPALM 637
+C+G +GYTL G + FPS A M
Sbjct: 495 LCQGFMQGYTLTGRTAIFPSYEAFM 519
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,296
Number of Sequences: 5004
Number of extensions: 91770
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 9
length of query: 665
length of database: 2,362,478
effective HSP length: 77
effective length of query: 588
effective length of database: 1,977,170
effective search space: 1162575960
effective search space used: 1162575960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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