GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001528-TA|BGIBMGA001528-PA|IPR000980|SH2 motif
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    32   1.7  
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453...    32   1.7  
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824...    31   3.9  
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76...    30   6.8  

>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 328 GHHHPAKLNILSPISDKSSQEPASETSDNNKNNNSQKVSPE-EGDTGNA 375
           GHHHP+   + + +S   S +PAS  +   +   S++  PE   D G A
Sbjct: 73  GHHHPSS-PLAAAVSASDSPDPASSPAPRGRGRKSRRGRPEPPSDAGAA 120


>03_01_0617 +
           4532651-4532893,4534713-4534939,4535077-4535150,
           4535753-4535809,4535940-4536280,4536979-4537047,
           4537152-4537219,4537404-4539569,4540101-4540178,
           4540326-4540437,4540722-4540772,4540886-4540936
          Length = 1178

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 403 RHSATGDAEIQGSDSGISIHSREGVDSRNAFINFKNSNT--GEERKN-DDVDLSDLPFDM 459
           R +A+G      SDS  S  S+EG D   AF++  + +   G  RK  D++ LS LP D+
Sbjct: 435 RSAASGSGSSSDSDSDASSSSKEGSD---AFVDITSDDDKGGAHRKAADELKLSSLPRDL 491

Query: 460 PKL 462
             L
Sbjct: 492 TAL 494


>11_04_0441 +
           17781533-17781775,17782007-17782114,17782386-17782471,
           17782546-17782807,17782921-17783120,17783770-17784012,
           17784118-17784394,17784625-17784759,17784880-17784960,
           17785311-17785406,17785661-17785756,17785834-17785890,
           17785967-17786035,17786154-17786240,17786534-17786635,
           17786730-17786819,17786900-17786980,17787573-17787653,
           17787761-17787856,17787937-17787993,17788093-17788137,
           17788218-17788346
          Length = 906

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 335 LNILSPISDKSSQEPASETSDNNKNNNSQKVSP--EEGDTGNATIQTAVEIIAK 386
           L  +S   D S  E  S TSD+   +NS+K  P  E+G+  N  ++T +E+ ++
Sbjct: 48  LEAISDEDDDSLTERDSTTSDSCGEDNSRKDPPLMEDGEIVNPLVRTLLELFSE 101


>05_01_0112 -
           757514-758444,758525-758571,759074-759236,759861-760366
          Length = 548

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)

Query: 51  EAVERSE--PDFKGRRKVTMKTDSVRRSKIPTIRQKRENENNAC-----ALSEELEKVH- 102
           EAVER +   + + RR+V ++ +  R+ K    R +R  E  A      A +EE E+ H 
Sbjct: 55  EAVERRKLKREEQFRREVELRREERRKVKKEKRRIRRLMETEAAGEVGEAAAEEEEEEHE 114

Query: 103 --IEGEERVASNSQLPLR 118
              EGEE  A+  Q+P +
Sbjct: 115 AETEGEEEAAAEEQVPAK 132


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,983,118
Number of Sequences: 37544
Number of extensions: 588093
Number of successful extensions: 1243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 4
length of query: 665
length of database: 14,793,348
effective HSP length: 87
effective length of query: 578
effective length of database: 11,527,020
effective search space: 6662617560
effective search space used: 6662617560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)