GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001528-TA|BGIBMGA001528-PA|IPR000980|SH2 motif
         (665 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.65 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   1.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   8.0  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   8.0  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 411 EIQGSDSGISIHSREGVDSRNAFINFKNSNTGEERKNDDVD 451
           ++QG  + +  H R+G  +  A+   K     E++K D++D
Sbjct: 180 QLQGISTPVEAHLRKGRGAIGAYGPEKGPKVPEKKKEDEID 220


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 339 SPISDKSSQEPASETSDNNKNNNSQKVSPEEGDTGN 374
           S I+  ++   AS  ++NN NNN+      +   GN
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNGN 261


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 403 RHSATGDAEIQGSDSGISIHSREGVDSRNAFINFKNSNTGEERKNDDVDLSDLPFDMPK 461
           + + TG  E+QG  +  S++S      + A + F+     +    +DV     P D+ K
Sbjct: 28  KRAPTGHQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNELFPEDINK 86


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 403 RHSATGDAEIQGSDSGISIHSREGVDSRNAFINFKNSNTGEERKNDDVDLSDLPFDMPK 461
           + + TG  E+QG  +  S++S      + A + F+     +    +DV     P D+ K
Sbjct: 28  KRAPTGHQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNELFPEDINK 86


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 403 RHSATGDAEIQGSDSGISIHSREGVDSRNAFINFKNSNTGEERKNDDVDLSDLPFDMPK 461
           + + TG  E+QG  +  S++S      + A + F+     +    +DV     P D+ K
Sbjct: 28  KRAPTGHQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNELFPEDINK 86


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,836
Number of Sequences: 429
Number of extensions: 5658
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 6
length of query: 665
length of database: 140,377
effective HSP length: 62
effective length of query: 603
effective length of database: 113,779
effective search space: 68608737
effective search space used: 68608737
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)