Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001528-TA|BGIBMGA001528-PA|IPR000980|SH2 motif
(665 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT... 38 0.021
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 33 0.80
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 32 1.4
At4g17410.1 68417.m02607 expressed protein 32 1.4
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 31 1.9
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 30 4.3
At2g34380.1 68415.m04209 expressed protein 29 7.5
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 29 9.9
At5g47310.1 68418.m05832 expressed protein 29 9.9
At4g16110.1 68417.m02442 two-component responsive regulator fami... 29 9.9
>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
identical to homeobox protein knotted-1 like 1 (KNAT1)
SP:P46639 from [Arabidopsis thaliana]
Length = 398
Score = 37.9 bits (84), Expect = 0.021
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 332 PAKLNIL-SPISDKSSQEPASETSDNNKNNNSQKVSPEEGDTGN 374
P +++ L SPIS + + S+T++NN NNNS P +T N
Sbjct: 12 PQRVSFLYSPISSSNKNDNTSDTNNNNNNNNSSNYGPGYNNTNN 55
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 32.7 bits (71), Expect = 0.80
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 337 ILSPISDKSSQEPASETSDNNKNNNSQKVSPEEGDTGNATIQTAVEII 384
+L +SDK SQE SE+S NK ++SQ V+ E G T + VE +
Sbjct: 4557 VLPAVSDKKSQE-ISESSRTNKTSSSQPVN--EMQLGRVTAKELVEAV 4601
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 31.9 bits (69), Expect = 1.4
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 37 AEERKIISSASSAFEAVERSEPDFKGRRKVTMKT--DSVRRSKIPTIRQKRENENNACAL 94
A + I+S S+ FE + EP K + KT S +K+EN+ ++
Sbjct: 830 APKSSAIASRSALFEKIPPQEPSIPKPVKASPKTPESPAPESNSKEQEEKKENDKEEGSM 889
Query: 95 SEELEKVHI--EGEERVASNSQLPLRGY 120
S +E + I + +E V LP Y
Sbjct: 890 SSRIESLTIQEDAKEGVEDEEDLPAHPY 917
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 342 SDKSSQEPASETSDNNKNNNSQKVS-PEE 369
S+KSS +P E DNNK+N ++S PEE
Sbjct: 630 SEKSSSDPTVEIDDNNKSNVFTRISFPEE 658
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 328 GHHHPAKLNILSPI-SDKSSQEPASETSDNNKNNNSQKVSP 367
GH P NILS I + S E A T NN NNN+ + +P
Sbjct: 421 GHEAPGPSNILSLIETGGSGWELALVTPQNNNNNNNPRPAP 461
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 30.3 bits (65), Expect = 4.3
Identities = 14/37 (37%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 489 GQSLQLNDEFGGGISNASSSQSV-EDLNQGNKLKSSL 524
GQ+ + +D G S+ S++++V EDLN+GN+L++++
Sbjct: 653 GQTAESSDTSGVSDSDLSTTKNVKEDLNKGNRLRAAV 689
>At2g34380.1 68415.m04209 expressed protein
Length = 509
Score = 29.5 bits (63), Expect = 7.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 35 LQAEERKIISSASSAFEAVERSEPDFKGRRKVTMKTDSVRRSKIPTIR--QKRE--NENN 90
L AE+ S S+ ++ + S P RR++ M TDS S ++ +KR EN+
Sbjct: 18 LDAEDEFFYDSFSNHYDCLNSSPPANLRRRRLPMDTDSSSSSSTSSLESCEKRSTVGEND 77
Query: 91 ACALS-EELEKVHIEGEERVASNSQL 115
+S + E + I+ + ++NS +
Sbjct: 78 ELEVSLVDFETIEIDVDVTDSANSSI 103
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 553 LVDATLPLDRQGWYHGTLARVEAESLLRDADEGAFLVR 590
L+ A +P + GWY G + E L RD G++ V+
Sbjct: 178 LLSAVIPYEESGWYDGQMWVKPPEVLARDRLLGSYKVK 215
>At5g47310.1 68418.m05832 expressed protein
Length = 245
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 45 SASSAFEAVERSEPDFKGRRKVTMKTDSVRRSKIPTIRQK 84
S+S FE RS P F RR V + T S+ RS + +K
Sbjct: 71 SSSGVFEVEPRSCPGFIFRRSVLLGTTSMSRSDFRSFMEK 110
>At4g16110.1 68417.m02442 two-component responsive regulator family
protein / response regulator family protein similar to
ARR2 protein GI:4210451 from [Arabidopsis thaliana];
contains Pfam profile: PF00072 response regulator
receiver domain
Length = 644
Score = 29.1 bits (62), Expect = 9.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 404 HSATGDAEIQGSDSGISIHSREGVDSRNAFINFKNSNTGEERKNDDVD 451
HS G E G D RE D+ ++ +N N + +RK ++VD
Sbjct: 161 HSG-GSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVD 207
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.130 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,166
Number of Sequences: 28952
Number of extensions: 473681
Number of successful extensions: 1325
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 10
length of query: 665
length of database: 12,070,560
effective HSP length: 86
effective length of query: 579
effective length of database: 9,580,688
effective search space: 5547218352
effective search space used: 5547218352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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