GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001527-TA|BGIBMGA001527-PA|undefined
         (52 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   0.31 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   5.0  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    19   5.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    19   5.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      18   8.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      18   8.7  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 0.31
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 11  DYSVPVDCVSAGPLQAPRPS 30
           D    +DC S   LQ P+PS
Sbjct: 85  DLPFNIDCTSRPKLQEPQPS 104


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 18.6 bits (36), Expect = 5.0
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 27   PRPSSFHEISAPKMSLHVNS 46
            P    F E+S+  ++LH+++
Sbjct: 1494 PSAEKFIEVSSNSITLHLSA 1513


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 18.6 bits (36), Expect = 5.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 11  DYSVPVDCVSAGPLQAPR 28
           D+  P D V  GP   PR
Sbjct: 140 DWMSPFDRVVCGPNGCPR 157


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 18.6 bits (36), Expect = 5.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 11  DYSVPVDCVSAGPLQAPR 28
           D+  P D V  GP   PR
Sbjct: 199 DWMSPFDRVVCGPNGCPR 216


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 17.8 bits (34), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 13  SVPVDCVSAGPLQAPRPS 30
           ++P  C +  PL  P P+
Sbjct: 123 ALPFFCHNGDPLSQPPPA 140


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 17.8 bits (34), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 13 SVPVDCVSAGPLQAPRPS 30
          ++P  C +  PL  P P+
Sbjct: 15 ALPFFCHNGDPLSQPPPA 32


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.127    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848
Number of Sequences: 317
Number of extensions: 398
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 52
length of database: 114,650
effective HSP length: 33
effective length of query: 19
effective length of database: 104,189
effective search space:  1979591
effective search space used:  1979591
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)