GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001527-TA|BGIBMGA001527-PA|undefined
         (52 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   0.69 
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    24   2.8  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    23   3.7  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    23   3.7  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    23   6.5  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 12  YSVPVDCVSAGPLQAPRPSSFHEISAPKMSLHVNSTIPES 51
           +S  V  V++ P+Q   PS+  +++ P  +L  +  +P S
Sbjct: 171 FSARVSRVNSTPIQLYDPSTQRQMARPMSNLQASQPVPSS 210


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 460

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 6  AALCADYSVPVDCVSAGPLQAPRPSSFHEISAPKMSLHVNSTIPESR 52
          A     Y+V      AG L A R S + + SAPK S   N  + +SR
Sbjct: 13 ATYATAYAVRTGLQLAGSLVAKRFSKYIQTSAPKSS-QFNLELVKSR 58


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 7   ALCADYSVPVDCVSAG-PLQAPRPSSFHEISAPKMSLHVNST 47
           A C + S+   CV+   P + PR + ++E  AP  +LH   T
Sbjct: 329 AWCYETSI---CVNEQIPSELPRETLYYEFFAPDYTLHPRLT 367


>SPBC365.02c |cox10||protoheme IX
          farnesyltransferase|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 387

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 19 VSAGPLQAPRPSSFHEISAPKMSLHV 44
          + A PL  P+PS+F E+  P++++ V
Sbjct: 75 MQAAPLY-PKPSAFLELGKPRLTVLV 99


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 13  SVPVDCVSAGPLQAPRPSSFHEISAPKMSLHVNSTIPE 50
           SVP+  VS  P  +    +  ++SA  +S+  +STI E
Sbjct: 165 SVPLSPVSTFPASSISLDASSDVSAADVSVGGSSTIKE 202


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.127    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,374
Number of Sequences: 5004
Number of extensions: 7429
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 6
length of query: 52
length of database: 2,362,478
effective HSP length: 33
effective length of query: 19
effective length of database: 2,197,346
effective search space: 41749574
effective search space used: 41749574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)