Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001527-TA|BGIBMGA001527-PA|undefined
(52 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1354 - 25972597-25973787,25974381-25974680 27 2.4
09_04_0507 + 18194320-18195081 25 5.7
02_05_0612 + 30348495-30348995,30349679-30350023 25 7.5
01_06_0509 - 29921224-29924589 25 7.5
11_03_0188 - 11338013-11338976,11339843-11340183 25 9.9
09_02_0615 - 11251869-11252832,11253699-11254039 25 9.9
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 25 9.9
06_03_0490 - 21375400-21376363,21377230-21377570 25 9.9
06_02_0143 - 12266120-12267083,12267950-12268290 25 9.9
06_02_0141 + 12259098-12259438,12260305-12261268 25 9.9
02_04_0118 + 19924184-19924524,19925391-19926354 25 9.9
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205... 25 9.9
>07_03_1354 - 25972597-25973787,25974381-25974680
Length = 496
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 12 YSVPVDCVSAGPLQAPRPSSFHEIS 36
+S +DC+ A ++A RP ++ IS
Sbjct: 75 FSAEIDCLCAAVMEAARPGAYRTIS 99
>09_04_0507 + 18194320-18195081
Length = 253
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 6 AALCADYSVPVDCVSAGPLQAPRPSSFHE 34
AA AD S VS GP + P PS+ E
Sbjct: 194 AATAADVSPAAVTVSEGPAEGPGPSAADE 222
>02_05_0612 + 30348495-30348995,30349679-30350023
Length = 281
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 19 VSAGPLQAPRPSSFHEISAPKMSLHVNSTI 48
V GPL P F+ + P + +N+T+
Sbjct: 145 VCGGPLAGINPGEFYRLHLPLIQCELNTTV 174
>01_06_0509 - 29921224-29924589
Length = 1121
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 19 VSAGPLQAPRPSSFHEISAPKMSL---HVNSTIPE 50
+S L+ P P+SF +S +++L +N TIPE
Sbjct: 636 LSYNQLEGPIPNSFSALSLSEINLSNNQLNGTIPE 670
>11_03_0188 - 11338013-11338976,11339843-11340183
Length = 434
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 13 SVPVDCVSAGPLQAPRPSSFHEISAPKMSLHV-NSTIP 49
S P + S +Q P PSS ++AP S V ST+P
Sbjct: 48 SSPPEAPSPATVQPPTPSSSPAVAAPSSSPAVPMSTMP 85
>09_02_0615 - 11251869-11252832,11253699-11254039
Length = 434
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 13 SVPVDCVSAGPLQAPRPSSFHEISAPKMSLHV-NSTIP 49
S P + S +Q P PSS ++AP S V ST+P
Sbjct: 48 SSPPEAPSPATVQPPTPSSSPAVAAPSSSPAVPMSTMP 85
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 5 MAALCADYSVPVDCVSAGPLQAPRPS 30
+AA C DY + +D V P P PS
Sbjct: 341 LAAGCGDYPMKLDEVVQDPCDKPGPS 366
>06_03_0490 - 21375400-21376363,21377230-21377570
Length = 434
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 13 SVPVDCVSAGPLQAPRPSSFHEISAPKMSLHV-NSTIP 49
S P + S +Q P PSS ++AP S V ST+P
Sbjct: 48 SSPPEAPSPATVQPPTPSSSPAVAAPSSSPAVPMSTMP 85
>06_02_0143 - 12266120-12267083,12267950-12268290
Length = 434
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 13 SVPVDCVSAGPLQAPRPSSFHEISAPKMSLHV-NSTIP 49
S P + S +Q P PSS ++AP S V ST+P
Sbjct: 48 SSPPEAPSPATVQPPTPSSSPAVAAPSSSPAVPMSTMP 85
>06_02_0141 + 12259098-12259438,12260305-12261268
Length = 434
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 13 SVPVDCVSAGPLQAPRPSSFHEISAPKMSLHV-NSTIP 49
S P + S +Q P PSS ++AP S V ST+P
Sbjct: 48 SSPPEAPSPATVQPPTPSSSPAVAAPSSSPAVPMSTMP 85
>02_04_0118 + 19924184-19924524,19925391-19926354
Length = 434
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 13 SVPVDCVSAGPLQAPRPSSFHEISAPKMSLHV-NSTIP 49
S P + S +Q P PSS ++AP S V ST+P
Sbjct: 48 SSPPEAPSPATVQPPTPSSSPAVAAPSSSPAVPMSTMP 85
>01_01_0250 +
2052599-2053358,2053581-2053604,2054813-2054848,
2055047-2056284
Length = 685
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 13 SVPVDCVSAGPLQAPRPSSFHEISAPKMSLHVNSTIP 49
+VP + S G + S HE++ P H NS+ P
Sbjct: 629 TVPANRPSMGKVLEMLERSVHELAMPPRPYHSNSSSP 665
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.127 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,758
Number of Sequences: 37544
Number of extensions: 50973
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 12
length of query: 52
length of database: 14,793,348
effective HSP length: 33
effective length of query: 19
effective length of database: 13,554,396
effective search space: 257533524
effective search space used: 257533524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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