GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001527-TA|BGIBMGA001527-PA|undefined
         (52 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)              29   0.53 
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   26   5.0  
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                25   6.5  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      25   8.7  

>SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)
          Length = 774

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 12  YSVPVDCVSAGPLQAPRPSSFH 33
           YS P+  +  GP   PRP SFH
Sbjct: 325 YSAPLPSIPTGPRIEPRPPSFH 346


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 8   LCADYSVPVDCVSAGPLQAPRPSSFHEISAPKMSL 42
           +C D +V   C+S G L   R S  H IS  ++ +
Sbjct: 649 VCVDLNVGRPCLSHGVLGCTRDSCMHYISEAELRM 683


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 9   CADYSVPVDCVSAGPLQAPRPSSFHEISAPKMSLHVNSTIPES 51
           C  +    +  S   + AP+ +S H I+ P+ +   + T PE+
Sbjct: 743 CTHHLTTPETTSTHHISAPQTTSTHHITTPQTTCTHHLTTPET 785


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 12  YSVPVDCVSAGPLQAPRPSSFHEISAPKMSL 42
           Y  PV+   A P+Q PRP     I      L
Sbjct: 242 YEAPVESEEAPPIQPPRPPKSEPIQGETYDL 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.127    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,685
Number of Sequences: 59808
Number of extensions: 54326
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 7
length of query: 52
length of database: 16,821,457
effective HSP length: 32
effective length of query: 20
effective length of database: 14,907,601
effective search space: 298152020
effective search space used: 298152020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)