GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001527-TA|BGIBMGA001527-PA|undefined
         (52 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL122002-1|CAI22169.1|  914|Homo sapiens chloride channel, calci...    29   3.1  
AF127036-1|AAD25487.1|  914|Homo sapiens calcium-activated chlor...    29   3.1  
AF039401-1|AAC95429.1|  914|Homo sapiens calcium-dependent chlor...    29   3.1  
AF039400-1|AAC95428.1|  914|Homo sapiens calcium-dependent chlor...    29   3.1  

>AL122002-1|CAI22169.1|  914|Homo sapiens chloride channel, calcium
           activated, family member 1 protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 23  PLQAPRPSSFHEISAPKMSLHVNSTIP 49
           P   P   S  E SAP  ++H+NSTIP
Sbjct: 868 PQTPPETPSPDETSAPCPNIHINSTIP 894


>AF127036-1|AAD25487.1|  914|Homo sapiens calcium-activated chloride
           channel protein 1 protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 23  PLQAPRPSSFHEISAPKMSLHVNSTIP 49
           P   P   S  E SAP  ++H+NSTIP
Sbjct: 868 PQTPPETPSPDETSAPCPNIHINSTIP 894


>AF039401-1|AAC95429.1|  914|Homo sapiens calcium-dependent chloride
           channel-1 protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 23  PLQAPRPSSFHEISAPKMSLHVNSTIP 49
           P   P   S  E SAP  ++H+NSTIP
Sbjct: 868 PQTPPETPSPDETSAPCPNIHINSTIP 894


>AF039400-1|AAC95428.1|  914|Homo sapiens calcium-dependent chloride
           channel-1 protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 23  PLQAPRPSSFHEISAPKMSLHVNSTIP 49
           P   P   S  E SAP  ++H+NSTIP
Sbjct: 868 PQTPPETPSPDETSAPCPNIHINSTIP 894


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.127    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,600,009
Number of Sequences: 224733
Number of extensions: 267298
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 4
length of query: 52
length of database: 73,234,838
effective HSP length: 32
effective length of query: 20
effective length of database: 66,043,382
effective search space: 1320867640
effective search space used: 1320867640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)