GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001527-TA|BGIBMGA001527-PA|undefined
         (52 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    25   4.9  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    25   4.9  

>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 16  VDCVSAGPLQAPRPSSFHEISAPKMSLHVNS 46
           V C    P  +PRPS  H++     S+H  S
Sbjct: 732 VACRDQTPRPSPRPSESHDLPTSSSSVHAPS 762


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 16  VDCVSAGPLQAPRPSSFHEISAPKMSLHVNS 46
           V C    P  +PRPS  H++     S+H  S
Sbjct: 798 VACRDQTPRPSPRPSESHDLPTSSSSVHAPS 828


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 4   MMAALCADYSVPVDCVSAGPLQAPRPSS 31
           MMAA  A + +P        LQ PRPSS
Sbjct: 102 MMAASGAQFPIPFPMQFQPALQQPRPSS 129


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 4   MMAALCADYSVPVDCVSAGPLQAPRPSS 31
           MMAA  A + +P        LQ PRPSS
Sbjct: 102 MMAASGAQFPIPFPMQFQPALQQPRPSS 129


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 4   MMAALCADYSVPVDCVSAGPLQAPRPSS 31
           MMAA  A + +P        LQ PRPSS
Sbjct: 102 MMAASGAQFPIPFPMQFQPALQQPRPSS 129


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.127    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,415
Number of Sequences: 27539
Number of extensions: 42356
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 5
length of query: 52
length of database: 12,573,161
effective HSP length: 33
effective length of query: 19
effective length of database: 11,664,374
effective search space: 221623106
effective search space used: 221623106
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)