GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001527-TA|BGIBMGA001527-PA|undefined
         (52 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t...    30   0.22 
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    26   2.7  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    26   3.5  
At2g01420.2 68415.m00063 auxin transport protein, putative simil...    25   6.1  
At2g01420.1 68415.m00062 auxin transport protein, putative simil...    25   6.1  

>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
           transfer protein (LTP)-related similar to geranyl
           diphosphate synthase large subunit [Mentha x piperita]
           GI:6449052
          Length = 205

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 3   IMMAALCADYSVPVDC-VSAGPLQAPRPSSFHEISAP 38
           I +   C    VPV C  SA PL  P P+SF   ++P
Sbjct: 94  ISLPRACGIPGVPVQCKASAAPLPTPGPASFGPTTSP 130


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 24  LQAPRPSSFHEISAPKMSLHVNSTIPES 51
           ++AP PSS  E+ APK S    S+ P S
Sbjct: 887 VEAPVPSSEPEVEAPKQSEATPSSSPPS 914


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 6    AALCADYSVPVDCVSAGPLQAPRPSSFHE 34
            A L AD    +  +    L++P PSSFHE
Sbjct: 1954 AVLAADAIPVLQLMMKSKLKSPAPSSFHE 1982


>At2g01420.2 68415.m00063 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 616

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 20  SAGPLQAPRPSSFHEISAPKMSLH--VNSTIP 49
           S GP   PRPS+F E +A K   +   NS++P
Sbjct: 272 SRGP--TPRPSNFEENNAVKYGFYNNTNSSVP 301


>At2g01420.1 68415.m00062 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 612

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 20  SAGPLQAPRPSSFHEISAPKMSLH--VNSTIP 49
           S GP   PRPS+F E +A K   +   NS++P
Sbjct: 272 SRGP--TPRPSNFEENNAVKYGFYNNTNSSVP 301


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.127    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,760
Number of Sequences: 28952
Number of extensions: 36284
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 5
length of query: 52
length of database: 12,070,560
effective HSP length: 33
effective length of query: 19
effective length of database: 11,115,144
effective search space: 211187736
effective search space used: 211187736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)