Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001526-TA|BGIBMGA001526-PA|undefined
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    24   9.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   9.7  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 4   VWRRVGLHSSRKKRDGSGTSQEVASSVPQEAEYQNIH 40
           ++R++GLH  +    G   S  + S VP   +  + H
Sbjct: 215 IFRKLGLHHGKHGHHGHSGSLSLKSLVPNHHDKHDKH 251


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 97  PPVEESTRTEQKRRRPPTKLKIFGIQWPLHSSDTRFVFKLQ 137
           P V+E  +  +   R   +L I  +  P  SS T F +KL+
Sbjct: 653 PKVQELLKGTESNLRKNAQLAILKLFAPQLSSSTHFDYKLE 693


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,735
Number of Sequences: 5004
Number of extensions: 16617
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 2
length of query: 137
length of database: 2,362,478
effective HSP length: 66
effective length of query: 71
effective length of database: 2,032,214
effective search space: 144287194
effective search space used: 144287194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)