GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001526-TA|BGIBMGA001526-PA|undefined
         (137 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    29   1.3  
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306...    27   7.1  
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    26   9.3  
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054...    26   9.3  

>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 97  PPVEESTRTEQKRRRPPTKLKIFGIQWPLHSSDTRF 132
           PPV + +       RP  KL   G+ +P+H S  RF
Sbjct: 713 PPVHQFSAPPMFNLRPQMKLNQPGVSYPMHESVDRF 748


>12_01_0388 +
           3059296-3060076,3060290-3061474,3061565-3061695,
           3061793-3061873,3062329-3062367
          Length = 738

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 6   RRVGLHSSRKKRDGSGTSQEVASSVPQEAEYQNIH---TLRTADLI 48
           +R+  H+S +++DGS   +    S  QE   +N+    + +TAD +
Sbjct: 625 KRLNAHASGREKDGSKVEKRKKKSAKQEKSSRNVKQAVSSQTADTV 670


>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
            8057595-8058314,8058404-8058603,8058988-8059172,
            8059287-8059354,8059432-8060246,8060502-8060599,
            8060702-8060887,8061358-8061538,8061651-8061812,
            8061894-8061937,8062059-8062115,8062409-8062505,
            8062614-8062786,8062868-8063081,8063270-8063395,
            8064072-8064188,8064459-8064566,8064729-8064898,
            8065049-8065127,8065211-8065285,8065845-8065942,
            8066030-8066137,8066238-8066295,8066527-8066631,
            8067461-8069516,8069804-8070697,8070896-8071852,
            8072022-8072075,8072157-8072222,8072294-8073472,
            8073868-8075598,8075764-8075829,8076763-8077788,
            8077893-8078041
          Length = 4264

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 2    EKVWRRVGLHSSRKKRDGSGTSQEVASSVPQEAEYQNIHTLRTADL 47
            +K   + G    RKK  G+G S++   S  Q A  + ++ + TAD+
Sbjct: 1900 DKPAEKQGARRRRKKTSGTG-SEDTGVSTRQRAASRRLYGIGTADI 1944


>01_06_0677 -
          31104736-31104897,31105046-31105234,31105313-31105470,
          31105558-31105648,31105787-31105961,31106065-31106204,
          31106293-31106511,31106589-31106718,31107163-31107229,
          31107347-31107441,31107535-31107606,31107681-31107736,
          31107995-31108060,31108151-31108264,31108787-31109092
          Length = 679

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 13 SRKKRDGSGTSQEVASSVPQEAEYQNIHTLRTADLIRQRQGEEK 56
          +R++R       EVA     EAE      +  ADL R+  GE+K
Sbjct: 31 ARRRRAARRKEPEVAVEAAPEAEEGREEEIEVADLGREGGGEKK 74


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,679,214
Number of Sequences: 37544
Number of extensions: 114482
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 14,793,348
effective HSP length: 75
effective length of query: 62
effective length of database: 11,977,548
effective search space: 742607976
effective search space used: 742607976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)