GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001526-TA|BGIBMGA001526-PA|undefined
         (137 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              22   6.4  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    22   8.4  

>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 9   GLHSSRKKRDGSGTSQEVASSVPQEAEYQNIHTLRTADLIRQRQGEEK 56
           G HSSR +R   G  Q+      ++ + Q  H  R     +Q+Q +++
Sbjct: 204 GAHSSRNRRGRQGPQQQ------EQRQQQQQHQQREQQQQQQQQQQQQ 245


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 27  ASSVPQEAEYQNIHTLRTADLIRQRQGEEKSTLRSSYII 65
           A   P++AE+   H +R  +LI + Q +    L    II
Sbjct: 916 ACEEPEDAEHTIFHCVRHRELIIRLQHQVDEELTPENII 954


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,369
Number of Sequences: 2123
Number of extensions: 3391
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 137
length of database: 516,269
effective HSP length: 58
effective length of query: 79
effective length of database: 393,135
effective search space: 31057665
effective search space used: 31057665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)