GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001526-TA|BGIBMGA001526-PA|undefined
         (137 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-10|AAB94240.2|  421|Caenorhabditis elegans Hypothetical...    27   6.3  
Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z48583-1|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    26   8.3  

>AF039048-10|AAB94240.2|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.9 protein.
          Length = 421

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 5   WRRVGLHSSRKKRDGSGTSQEV 26
           W R      RKKRDG G+  EV
Sbjct: 99  WNRDPFPEGRKKRDGRGSEDEV 120


>Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical
           protein F31C3.6a protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 12  SSRKKRDGSGTSQEVASSVPQEAEYQNIHTLRTADLIRQRQGEEKSTLRSSYI 64
           S R+ RD S   +E A     + E   +   + +D+++     EKS  R SY+
Sbjct: 424 SGRESRDESEEDEETAPGTEGQKEISTMTQSKVSDIVK---SFEKSAPRPSYV 473


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
          protein T23G4.1 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 1  MEKVWRRVGLHSSRKKRDGSGTSQEVASSVPQEAEYQNIHTLRTADLIRQRQGEEKSTLR 60
          + K    +GL     K++G+ +S     S PQ  + +  H L      +Q+Q ++KS+ R
Sbjct: 28 LAKTCETIGLPEGSSKKNGASSS-----SSPQGKKDEKNHILHHQHHQQQQQSKQKSSPR 82

Query: 61 SS 62
          S+
Sbjct: 83 ST 84


>Z48583-1|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1 protein.
          Length = 3396

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 36   YQNIHTLRTADL---IRQ--RQGEEKSTLRSSYIIRNGDNFILVEXXXXXXXXXXXXXXX 90
            Y++ HT     +   IRQ  R   ++S L   YI RN D  ++ E               
Sbjct: 1775 YEHQHTAMLDQMWAGIRQELRVLNQESLLEMMYIQRNVDKLLVPEHRKISQFDENDK--- 1831

Query: 91   XXXHHTPPVEESTRTEQKRRRPPTKL 116
               H +PP+    R   KR R PT++
Sbjct: 1832 ---HQSPPIVTPLRLAGKRGRKPTEI 1854


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
          protein TLP-1 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 1  MEKVWRRVGLHSSRKKRDGSGTSQEVASSVPQEAEYQNIHTLRTADLIRQRQGEEKSTLR 60
          + K    +GL     K++G+ +S     S PQ  + +  H L      +Q+Q ++KS+ R
Sbjct: 28 LAKTCETIGLPEGSSKKNGASSS-----SSPQGKKDEKNHILHHQHHQQQQQSKQKSSPR 82

Query: 61 SS 62
          S+
Sbjct: 83 ST 84


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,707
Number of Sequences: 27539
Number of extensions: 96798
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 5
length of query: 137
length of database: 12,573,161
effective HSP length: 74
effective length of query: 63
effective length of database: 10,535,275
effective search space: 663722325
effective search space used: 663722325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)