GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001526-TA|BGIBMGA001526-PA|undefined
         (137 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    29   1.1  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    27   4.5  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    27   5.9  

>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
           EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
           member of the natural resistance-associated macrophage
           protein (NRAMP) metal transporter family, PMID:11500563;
           metal transport capacity has not been shown,
           PMID:11500563, PMID:1038174
          Length = 1294

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 22  TSQEVASSVPQEAEYQ-NIHTLRTADLIRQRQGEEKSTLRSSYIIRNGDNFILVE 75
           T QE+ SS P+E E      T + + L      +E+S L+S+ +    D  ++VE
Sbjct: 534 TDQEIRSSPPEERELDVKYSTSQVSSLKEDSDVKEQSVLQSTVVNEVSDKDLIVE 588


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-containing
            protein similarity to TETRATRICOPEPTIDE REPEAT PROTEIN 2
            , human, SWISSPROT:TTC2_HUMAN; contains Pfam profiles
            PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 10   LHSSRKKRDGSGTSQEVASSVPQEAEYQN 38
            +H+S+K+RDGS TS     + P  +  +N
Sbjct: 1111 MHNSQKRRDGSSTSGADTDNYPFHSSRRN 1139


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 98  PVEESTRTE-QKRRRPPTKLKIFGIQWPLHSSD 129
           PV  ST T+   RR PPT   +F I+ P  S D
Sbjct: 225 PVPTSTPTKGSPRRNPPTTHPVFPIESPAVSPD 257


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,602
Number of Sequences: 28952
Number of extensions: 90835
Number of successful extensions: 236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 3
length of query: 137
length of database: 12,070,560
effective HSP length: 74
effective length of query: 63
effective length of database: 9,928,112
effective search space: 625471056
effective search space used: 625471056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)