Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001525-TA|BGIBMGA001525-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR002307|Tyrosyl-tRNA synthetase, class Ib,
IPR002547|t-RNA-binding region, IPR002305|Aminoacyl-tRNA synthetase,
class Ib
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23094| Best HMM Match : No HMM Matches (HMM E-Value=.)             173   2e-43
SB_33286| Best HMM Match : tRNA_bind (HMM E-Value=2.6e-07)             81   1e-15
SB_7805| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   1e-08
SB_19636| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   8e-05
SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 33   0.48 
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)               29   4.5  
SB_44979| Best HMM Match : PkinA_anch (HMM E-Value=2.6)                29   6.0  
SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               29   7.9  
SB_34039| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  

>SB_23094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score =  173 bits (421), Expect = 2e-43
 Identities = 86/127 (67%), Positives = 99/127 (77%), Gaps = 13/127 (10%)

Query: 53  MLKIADFLKAGCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKL 112
           M KIADFL AGCEVTIL ADLHAYLDN+KAPWELL  R +YYE  IKAML SI VPL+KL
Sbjct: 1   MTKIADFLHAGCEVTILLADLHAYLDNLKAPWELLEHRVKYYEELIKAMLESINVPLDKL 60

Query: 113 KFVRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQRK 172
           KFV+GTEYQL+K+Y LDV++++++ TE              LDEEYLKVDAQFGGVDQRK
Sbjct: 61  KFVKGTEYQLNKDYILDVFKMTTIATE-------------ALDEEYLKVDAQFGGVDQRK 107

Query: 173 IFAMSEK 179
           IF  +EK
Sbjct: 108 IFTFAEK 114


>SB_33286| Best HMM Match : tRNA_bind (HMM E-Value=2.6e-07)
          Length = 53

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 33/52 (63%), Positives = 44/52 (84%)

Query: 215 HPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVLCNLKAAKMR 266
           HPDADALY+E++DVGE+ PRT+VSGL  ++ +E++QDR VV+LCNLK   MR
Sbjct: 1   HPDADALYLEQVDVGEEAPRTVVSGLAEYISLEDLQDRMVVMLCNLKPVNMR 52


>SB_7805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 25/34 (73%), Positives = 28/34 (82%)

Query: 66 VTILFADLHAYLDNMKAPWELLALRTQYYEAAIK 99
          VTIL ADLHAY+DN+KAPWELL  R +YYE  IK
Sbjct: 1  VTILLADLHAYVDNLKAPWELLEHRVKYYEELIK 34


>SB_19636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 45.2 bits (102), Expect = 8e-05
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 273 MVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLNPKKK 319
           MV+C + DE   V  ++PP+G   GDR+V +  + GEPD  LNPKKK
Sbjct: 1   MVMCCNRDEKWTV--VVPPEGAAPGDRVVFDGQE-GEPDAQLNPKKK 44


>SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)

Query: 273 MVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLNPKKK 319
           MV+C + D+   V  ++PP+G+  GDR+V +  + GEPD  LNPKKK
Sbjct: 115 MVMCCNRDDKWTV--VVPPEGSAPGDRVVFDGQE-GEPDAQLNPKKK 158



 Score = 39.5 bits (88), Expect = 0.004
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 187 KGNINQAVDDVTPSKLDIRVGHIVEVSRHPDADALYVEK 225
           K   N    D++ S+L+  VG I  + +HPDAD+L+VE+
Sbjct: 75  KDEKNSGAADISVSRLNFMVGKIQSIKKHPDADSLFVEE 113


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 16  QEVLGDDKLTEILKQRDL-KIYWGTATTGRPHVAYFVPMLKIADFLKAGCEVTILFADLH 74
           Q ++GD + +E+L+ R L ++   TA T R           +A +    C+V++L     
Sbjct: 799 QHIIGDQEFSELLECRTLQQVLLFTAPTSRDQDIARTSGSSVATY---ACKVSVL----- 850

Query: 75  AYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFV 115
           A+L +   P+ L+A+  + + A +  + +S+ V   +L+++
Sbjct: 851 AWLGSTVQPYLLIAVAFEPFMAVVYPLTSSVQVTKSRLRWI 891


>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
          Length = 910

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 316 PKKKVWEKLQADLKTNDNLTAVWQVHDAIRTVE 348
           PKK    K++ ++K NDN   +W V  A+  VE
Sbjct: 109 PKKLKNRKVEVNIKNNDNKCFMWSVLAALHPVE 141


>SB_44979| Best HMM Match : PkinA_anch (HMM E-Value=2.6)
          Length = 180

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 290 PPKGTKAGDRIVVEEYDTGEPDEVLNPKKKVWEKLQADLKTNDNLTAVWQVHDAIRTVED 349
           P +G K   +I      + +P E L    K++E L+   K  ++L +  ++HD +R    
Sbjct: 55  PYEGIKDPTKIYKALRRSTKPHEDLQNPTKIYETLRRSTKPYEDLPSPTKIHDTLRRSTK 114

Query: 350 RQLAQNSPEEGY 361
                 SP   Y
Sbjct: 115 HYADLRSPARIY 126


>SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 313

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 70  FADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEY 120
           + D HAY     +PW     +   Y   +KAM  ++      L+ V GT Y
Sbjct: 199 YIDFHAYSQMFLSPWGYTDAKPSNYTEHMKAMTAAVNA----LQAVHGTRY 245


>SB_34039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 302 VEEYDTGEPDEVLNPKKKVWEKLQADLKTNDN---LTAVWQVHDAIRTVEDR 350
           + E  T +     N    +W  +  + K  ++   L  VWQ+HD   TV +R
Sbjct: 17  IAELSTTDFSSNQNASNPIWAFIDGEKKAKESDQTLVKVWQIHDGEMTVVER 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,110
Number of Sequences: 59808
Number of extensions: 479146
Number of successful extensions: 1089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 13
length of query: 365
length of database: 16,821,457
effective HSP length: 83
effective length of query: 282
effective length of database: 11,857,393
effective search space: 3343784826
effective search space used: 3343784826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)