Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001525-TA|BGIBMGA001525-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR002307|Tyrosyl-tRNA synthetase, class Ib,
IPR002547|t-RNA-binding region, IPR002305|Aminoacyl-tRNA synthetase,
class Ib
         (365 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051662-1|AAK93086.1|  525|Drosophila melanogaster LD21116p pro...   310   2e-84
AE014296-2739|AAF49462.1|  525|Drosophila melanogaster CG4561-PA...   310   2e-84
AE013599-747|AAF59019.2|  323|Drosophila melanogaster CG8235-PA ...   171   2e-42
BT003541-1|AAO39545.1|  492|Drosophila melanogaster RE05264p pro...    33   0.62 
AE014134-1847|AAF52919.1|  572|Drosophila melanogaster CG5022-PA...    33   0.62 
AE013599-1753|AAF58348.1|  883|Drosophila melanogaster CG6197-PA...    30   4.4  
BT011344-1|AAR96136.1| 1447|Drosophila melanogaster RH51925p pro...    29   7.6  
AE013599-2212|AAF58047.1| 1448|Drosophila melanogaster CG8443-PA...    29   7.6  

>AY051662-1|AAK93086.1|  525|Drosophila melanogaster LD21116p
           protein.
          Length = 525

 Score =  310 bits (762), Expect = 2e-84
 Identities = 167/257 (64%), Positives = 193/257 (75%), Gaps = 19/257 (7%)

Query: 6   EKKHLITRNLQEVLGDDKLTEILKQRDLKIYWGTATTGRPHVAYFVPMLKIADFLKAGCE 65
           EKK LITRNLQE LGDDKLT+IL +RDLKIYWGTATTG+PHVAYFVPM KIADFLKAGCE
Sbjct: 8   EKKALITRNLQETLGDDKLTKILAERDLKIYWGTATTGKPHVAYFVPMSKIADFLKAGCE 67

Query: 66  VTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQLSKE 125
           VTILFADLHAYLDNMKAPW LL LRT+YYE  IKAML+SIGVPLEKLKFV+G++YQLSKE
Sbjct: 68  VTILFADLHAYLDNMKAPWSLLELRTKYYEQVIKAMLSSIGVPLEKLKFVKGSDYQLSKE 127

Query: 126 YTLDVYRLSSVVTEHDAKKAGAEVVK---------------PTLDEEYLKVDAQFGGVDQ 170
           YTLDVY+LSSVVT+HDAKKAGAEVVK                 LDEEYLKVDAQFGGVDQ
Sbjct: 128 YTLDVYKLSSVVTQHDAKKAGAEVVKQVEYPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 187

Query: 171 RKIFAMSEKFLRLIRVKGNINQAVDDVTPSKLDIRVGHIVEVSRHP--DADALYVEKIDV 228
           RKIF  SEK+L  +  +  I+  ++ + P     ++    E S+    D+ A   +K+  
Sbjct: 188 RKIFTFSEKYLPQLGYEKRIH-FMNPMVPGLAGGKMSSSEEDSKIDLLDSPANVKKKLKK 246

Query: 229 GEDEPRTIV-SGLVNFV 244
              EP  I  +GL++FV
Sbjct: 247 AFCEPGNIADNGLLSFV 263



 Score =  175 bits (427), Expect = 6e-44
 Identities = 86/145 (59%), Positives = 105/145 (72%), Gaps = 1/145 (0%)

Query: 195 DDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDV 254
           D+  P +LDIRVG +VEV+RHPDAD LYV KID+ E +PRTI+SGLV FV  EE+  R V
Sbjct: 360 DEDAPHRLDIRVGKVVEVARHPDADTLYVLKIDLAEAQPRTIISGLVKFVTEEELNQRLV 419

Query: 255 VVLCNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVL 314
            VLCNLK +KMRG+ S+GMVLC S  +   VEP++ P    AG R+  E + +G PDE L
Sbjct: 420 AVLCNLKPSKMRGILSEGMVLCTSNADHTVVEPIVLPATATAGSRLSFEGF-SGTPDEQL 478

Query: 315 NPKKKVWEKLQADLKTNDNLTAVWQ 339
           NPKKKVWEKL AD KTN +  AVW+
Sbjct: 479 NPKKKVWEKLSADFKTNSDGLAVWK 503


>AE014296-2739|AAF49462.1|  525|Drosophila melanogaster CG4561-PA
           protein.
          Length = 525

 Score =  310 bits (762), Expect = 2e-84
 Identities = 167/257 (64%), Positives = 193/257 (75%), Gaps = 19/257 (7%)

Query: 6   EKKHLITRNLQEVLGDDKLTEILKQRDLKIYWGTATTGRPHVAYFVPMLKIADFLKAGCE 65
           EKK LITRNLQE LGDDKLT+IL +RDLKIYWGTATTG+PHVAYFVPM KIADFLKAGCE
Sbjct: 8   EKKALITRNLQETLGDDKLTKILAERDLKIYWGTATTGKPHVAYFVPMSKIADFLKAGCE 67

Query: 66  VTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQLSKE 125
           VTILFADLHAYLDNMKAPW LL LRT+YYE  IKAML+SIGVPLEKLKFV+G++YQLSKE
Sbjct: 68  VTILFADLHAYLDNMKAPWSLLELRTKYYEQVIKAMLSSIGVPLEKLKFVKGSDYQLSKE 127

Query: 126 YTLDVYRLSSVVTEHDAKKAGAEVVK---------------PTLDEEYLKVDAQFGGVDQ 170
           YTLDVY+LSSVVT+HDAKKAGAEVVK                 LDEEYLKVDAQFGGVDQ
Sbjct: 128 YTLDVYKLSSVVTQHDAKKAGAEVVKQVEYPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 187

Query: 171 RKIFAMSEKFLRLIRVKGNINQAVDDVTPSKLDIRVGHIVEVSRHP--DADALYVEKIDV 228
           RKIF  SEK+L  +  +  I+  ++ + P     ++    E S+    D+ A   +K+  
Sbjct: 188 RKIFTFSEKYLPQLGYEKRIH-FMNPMVPGLAGGKMSSSEEDSKIDLLDSPANVKKKLKK 246

Query: 229 GEDEPRTIV-SGLVNFV 244
              EP  I  +GL++FV
Sbjct: 247 AFCEPGNIADNGLLSFV 263



 Score =  175 bits (427), Expect = 6e-44
 Identities = 86/145 (59%), Positives = 105/145 (72%), Gaps = 1/145 (0%)

Query: 195 DDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDV 254
           D+  P +LDIRVG +VEV+RHPDAD LYV KID+ E +PRTI+SGLV FV  EE+  R V
Sbjct: 360 DEDAPHRLDIRVGKVVEVARHPDADTLYVLKIDLAEAQPRTIISGLVKFVTEEELNQRLV 419

Query: 255 VVLCNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVL 314
            VLCNLK +KMRG+ S+GMVLC S  +   VEP++ P    AG R+  E + +G PDE L
Sbjct: 420 AVLCNLKPSKMRGILSEGMVLCTSNADHTVVEPIVLPATATAGSRLSFEGF-SGTPDEQL 478

Query: 315 NPKKKVWEKLQADLKTNDNLTAVWQ 339
           NPKKKVWEKL AD KTN +  AVW+
Sbjct: 479 NPKKKVWEKLSADFKTNSDGLAVWK 503


>AE013599-747|AAF59019.2|  323|Drosophila melanogaster CG8235-PA
           protein.
          Length = 323

 Score =  171 bits (415), Expect = 2e-42
 Identities = 86/143 (60%), Positives = 104/143 (72%), Gaps = 3/143 (2%)

Query: 197 VTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVV 256
           V   +LD+RVG IVEV RHPDAD+LY+EKID GE  PRT+VSGLV FVP+EEMQ+R VVV
Sbjct: 161 VDVGRLDLRVGKIVEVGRHPDADSLYLEKIDCGEAAPRTVVSGLVKFVPLEEMQNRLVVV 220

Query: 257 LCNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLNP 316
           +CNLK AKMRGV S+ MV+CAS   P++VE L PP G   GD +  E Y   +PD  LNP
Sbjct: 221 MCNLKPAKMRGVTSEAMVMCAST--PEKVEVLSPPAGAVPGDLVHCEGYPR-QPDAQLNP 277

Query: 317 KKKVWEKLQADLKTNDNLTAVWQ 339
           KKK++E    DLKTN  L A ++
Sbjct: 278 KKKIFESCAPDLKTNGELVACYK 300


>BT003541-1|AAO39545.1|  492|Drosophila melanogaster RE05264p
           protein.
          Length = 492

 Score = 33.1 bits (72), Expect = 0.62
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 50  FVPMLKIADFLKAGCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIG 106
           FVP +    F  AG  V I+ ++  A+     +P E+L LR QYY+   + +L  +G
Sbjct: 433 FVPSVIFVAFAMAGTAVFIMESESEAFEQLRNSP-EMLCLRYQYYQPLKEFVLEKLG 488


>AE014134-1847|AAF52919.1|  572|Drosophila melanogaster CG5022-PA
           protein.
          Length = 572

 Score = 33.1 bits (72), Expect = 0.62
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 50  FVPMLKIADFLKAGCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIG 106
           FVP +    F  AG  V I+ ++  A+     +P E+L LR QYY+   + +L  +G
Sbjct: 513 FVPSVIFVAFAMAGTAVFIMESESEAFEQLRNSP-EMLCLRYQYYQPLKEFVLEKLG 568


>AE013599-1753|AAF58348.1|  883|Drosophila melanogaster CG6197-PA
           protein.
          Length = 883

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 84  WELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTE 119
           W  + LR Q +EAA+K M  +  +P  K+ +   TE
Sbjct: 438 WAEMELRQQQFEAALKLMQRATAMPKRKIAYYDDTE 473


>BT011344-1|AAR96136.1| 1447|Drosophila melanogaster RH51925p
           protein.
          Length = 1447

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 130 VYRLSSVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQRKIFAMSEKFLRLIRVKG 188
           +Y L +VV ++   +  A+ + P + E   +    +G +D  K      K+L L+R  G
Sbjct: 555 LYTLGTVVVDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHPKYLELLRQAG 613


>AE013599-2212|AAF58047.1| 1448|Drosophila melanogaster CG8443-PA
           protein.
          Length = 1448

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 130 VYRLSSVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQRKIFAMSEKFLRLIRVKG 188
           +Y L +VV ++   +  A+ + P + E   +    +G +D  K      K+L L+R  G
Sbjct: 556 LYTLGTVVVDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHPKYLELLRQAG 614


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,343
Number of Sequences: 52641
Number of extensions: 722823
Number of successful extensions: 1688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 12
length of query: 365
length of database: 24,830,863
effective HSP length: 86
effective length of query: 279
effective length of database: 20,303,737
effective search space: 5664742623
effective search space used: 5664742623
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)