Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001525-TA|BGIBMGA001525-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR002307|Tyrosyl-tRNA synthetase, class Ib,
IPR002547|t-RNA-binding region, IPR002305|Aminoacyl-tRNA synthetase,
class Ib
         (365 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   9.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   9.5  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 176 MSEKFLRLIRVKGNINQAVDDVTPSK 201
           +SEKF +LIR++ N+      + P+K
Sbjct: 611 ISEKFRKLIRIEDNVATLRMKLNPTK 636


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 176 MSEKFLRLIRVKGNINQAVDDVTPSK 201
           +SEKF +LIR++ ++      + P+K
Sbjct: 558 ISEKFRKLIRIEDDVATLRMKLNPTK 583


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 110 EKLKFVRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGAEVVK 151
           +KL+FV G    L      D++R+S             EV+K
Sbjct: 400 KKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVLK 441


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 110 EKLKFVRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGAEVVK 151
           +KL+FV G    L      D++R+S             EV+K
Sbjct: 106 KKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVLK 147


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,138
Number of Sequences: 429
Number of extensions: 3950
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 365
length of database: 140,377
effective HSP length: 59
effective length of query: 306
effective length of database: 115,066
effective search space: 35210196
effective search space used: 35210196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)