Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001525-TA|BGIBMGA001525-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR002307|Tyrosyl-tRNA synthetase, class Ib,
IPR002547|t-RNA-binding region, IPR002305|Aminoacyl-tRNA synthetase,
class Ib
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285... 167 1e-41
04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522 144 1e-34
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 128 7e-30
08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152... 42 0.001
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291... 42 0.001
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 33 0.48
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 32 0.83
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 31 1.5
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 30 3.4
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876... 29 7.8
>06_03_0207 -
17927753-17927983,17928077-17928178,17928273-17928502,
17929257-17929343,17931263-17931389,17931485-17931628,
17931920-17931985,17932136-17932254,17932437-17932551,
17932626-17932732,17932969-17932983,17933810-17933900,
17934528-17934671,17934750-17934980,17935093-17935248,
17935330-17935483,17935973-17936117,17936241-17936355
Length = 792
Score = 167 bits (406), Expect = 1e-41
Identities = 80/144 (55%), Positives = 104/144 (72%), Gaps = 1/144 (0%)
Query: 196 DVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVV 255
DVT +KLDIRVG I + +HPDAD+LYVE+IDVGE+ PRT+VSGLV F+P+EEMQ+R V
Sbjct: 628 DVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVC 687
Query: 256 VLCNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLN 315
VLCNLK MRG++S MVL AS ++ +VE + PP+ G+R+ Y +GEP+ LN
Sbjct: 688 VLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGY-SGEPEASLN 746
Query: 316 PKKKVWEKLQADLKTNDNLTAVWQ 339
K K WEKL ADL +N L A ++
Sbjct: 747 AKSKTWEKLSADLHSNGELVACYK 770
>04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522
Length = 252
Score = 144 bits (348), Expect = 1e-34
Identities = 70/145 (48%), Positives = 99/145 (68%), Gaps = 5/145 (3%)
Query: 202 LDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVLCNLK 261
LDIRVG +V+ RHP+AD LYVE++DVGE++PRTI SGLVN++PI+++QD +V+VL NLK
Sbjct: 88 LDIRVGRVVKAWRHPEADTLYVEEVDVGEEQPRTICSGLVNYLPIDQLQDSNVIVLANLK 147
Query: 262 AAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYD-TGEPDEVLNP---- 316
MRG++S GM++ AS + VE L PP+G+ G+R+ D E +P
Sbjct: 148 PRNMRGIKSNGMLMAASDASHENVELLTPPEGSVPGERVWFGTEDGKDRQSEAASPNQVQ 207
Query: 317 KKKVWEKLQADLKTNDNLTAVWQVH 341
KKK+WE +Q L+T++N TA H
Sbjct: 208 KKKIWESVQPHLRTSENCTAFLGEH 232
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 128 bits (309), Expect = 7e-30
Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Query: 200 SKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVLCN 259
S L+I+VG I + +HP AD+L VE+ID+G+ +VSGL F EE+ +R VV++ N
Sbjct: 250 SILNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVSGLAKFFSPEELVNRHVVLITN 309
Query: 260 LKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLNPKKK 319
+K K+R V S G+VLCAS + VEPL+PP+G K G+RI +D G+P++VLNPKKK
Sbjct: 310 VKPGKLRDVMSAGLVLCASNQDHTVVEPLIPPEGAKPGERISFAGFD-GKPEDVLNPKKK 368
Query: 320 VWEKLQADLKTNDNLTAVWQ 339
+K+ DL T+ N A ++
Sbjct: 369 QLDKITPDLHTDGNGIATYR 388
>08_02_0180 +
13912769-13913008,13914723-13915006,13915118-13915214,
13915358-13915393,13916665-13916810,13917002-13917107,
13917358-13917417,13917787-13917876
Length = 352
Score = 41.5 bits (93), Expect = 0.001
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 5 QEKKHLITRNLQEVLGDDKLTEILKQRDLKI-YWGTATTGRPHVAY-FVPMLKIADFLKA 62
Q++ L+ +E + +D+L +L+++ + I Y G +GR H+A V + + ++A
Sbjct: 35 QDRFELLRGIGEECIQEDELMNLLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRA 94
Query: 63 GCEVTILFADLHAYLDN 79
GC+V I AD A L+N
Sbjct: 95 GCKVKIWIADWFAQLNN 111
>08_01_0325 +
2917942-2918193,2919057-2919340,2919453-2919549,
2919677-2919712,2920570-2920715,2920882-2920987,
2921160-2921219,2921848-2921898
Length = 343
Score = 41.5 bits (93), Expect = 0.001
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 5 QEKKHLITRNLQEVLGDDKLTEILKQRDLKI-YWGTATTGRPHVAY-FVPMLKIADFLKA 62
Q++ L+ +E + +D+L +L+++ + I Y G +GR H+A V + + ++A
Sbjct: 39 QDRFELLRGIGEECIQEDELMNLLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRA 98
Query: 63 GCEVTILFADLHAYLDN 79
GC+V I AD A L+N
Sbjct: 99 GCKVKIWIADWFAQLNN 115
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 32.7 bits (71), Expect = 0.48
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 250 QDRDVVVLCNLKAAKMRGVESKGMVLCA-SVDEPKQVEPLLPPKGTKAGDRI--VVEEYD 306
Q+R + NLK ++RG E K LCA S P G K GD++ +V E+D
Sbjct: 1383 QERKKIPAQNLKMKRLRGDEIKDYFLCAFSWGRPYLTREFFHRLGEKMGDKVMLIVAEHD 1442
Query: 307 TGEPDEVLN 315
LN
Sbjct: 1443 DKHVAGALN 1451
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 31.9 bits (69), Expect = 0.83
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 20 GDDKLTEILKQRDLKIYW---GTATTGRPHVAYFVPMLKIADF-LKAGCEVTILFADLHA 75
GD K E+L+ K+ W TG P Y LK D + +V + A +
Sbjct: 353 GDVKFAEVLEMMGAKVTWTDTSVTVTGPPREPYGKKHLKAVDVNMNKMPDVAMTLAVVAL 412
Query: 76 YLDNMKAPWELLALRTQYYE--AAIKAMLTSIGVPLEK 111
+ D A ++ + R + E AI+ LT +G +E+
Sbjct: 413 FADGPTAIRDVASWRVKETERMVAIRTELTKLGASVEE 450
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 31.1 bits (67), Expect = 1.5
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 277 ASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLN-------PKKKVWEKL--QAD 327
A V E K PPK +KA R E EP + ++ E+L Q
Sbjct: 139 AKVRERKAAPATAPPKFSKAARRFYNENIKEHEPQRLAKVLAAAGVASRRTCEELIFQGK 198
Query: 328 LKTNDNLTAVWQVHDAIRTVEDRQLAQNSPEEGYS 362
+ N ++ QVH+ R E R+L QN+ E Y+
Sbjct: 199 VTVNGSVCTAPQVHEG-RNHEVRELVQNAGLEVYA 232
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 303 EEYDTGEPDEVLNPKKKVWEKLQADLKTNDNLTAVWQVHDAIRTVEDRQLAQNSPEE 359
EE + GE + + KKK W +N+ + A++ ++DR + +N EE
Sbjct: 727 EEEEDGEENSGASQKKKGWFSSMFKSIAGNNVLEKSDIQPALKALKDRLMTKNVAEE 783
>06_03_1041 -
27086661-27086981,27087089-27087295,27087398-27087675,
27088360-27088471
Length = 305
Score = 28.7 bits (61), Expect = 7.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 144 KAGAEVVKPTLDEEYLKVDAQFGGVDQRKIFAMSEKFLRLIRVKG 188
KAG E + T ++ + ++ + FG +F ++ F+R +R KG
Sbjct: 130 KAGYEYDEETFEKIFKRIYSSFGSSAPYSVFPDAQPFMRWLRGKG 174
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,376
Number of Sequences: 37544
Number of extensions: 430255
Number of successful extensions: 1027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 10
length of query: 365
length of database: 14,793,348
effective HSP length: 83
effective length of query: 282
effective length of database: 11,677,196
effective search space: 3292969272
effective search space used: 3292969272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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