GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001525-TA|BGIBMGA001525-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR002307|Tyrosyl-tRNA synthetase, class Ib,
IPR002547|t-RNA-binding region, IPR002305|Aminoacyl-tRNA synthetase,
class Ib
         (365 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    24   7.6  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    24   7.6  

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 210 VEVSRHPDADALYVEKIDVGED----EPRTIVSGLVNFVPIEEMQD 251
           +E  +  DA A+Y + ID+ ++    E   +  GL N+    + +D
Sbjct: 101 IETEKDRDAQAIYQKSIDINKELEGKEDDKVYRGLNNYTQFFKKKD 146


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 210 VEVSRHPDADALYVEKIDVGED----EPRTIVSGLVNFVPIEEMQD 251
           +E  +  DA A+Y + ID+ ++    E   +  GL N+    + +D
Sbjct: 101 IETEKDRDAQAIYQKSIDINKELEGKEDDKVYRGLNNYTQFFKKKD 146


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 361,055
Number of Sequences: 2123
Number of extensions: 14272
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 2
length of query: 365
length of database: 516,269
effective HSP length: 65
effective length of query: 300
effective length of database: 378,274
effective search space: 113482200
effective search space used: 113482200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)