Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001525-TA|BGIBMGA001525-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR002307|Tyrosyl-tRNA synthetase, class Ib,
IPR002547|t-RNA-binding region, IPR002305|Aminoacyl-tRNA synthetase,
class Ib
(365 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-17|CAD21668.2| 722|Caenorhabditis elegans Hypothetical... 227 7e-60
AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA ... 227 7e-60
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 164 8e-41
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 28 9.1
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 28 9.1
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 28 9.1
>AL132876-17|CAD21668.2| 722|Caenorhabditis elegans Hypothetical
protein Y105E8A.19 protein.
Length = 722
Score = 227 bits (556), Expect = 7e-60
Identities = 131/261 (50%), Positives = 166/261 (63%), Gaps = 21/261 (8%)
Query: 5 QEKKHLITRNLQEVLGDDKLTEILKQ--RDLKIYWGTATTGRPHVAYFVPMLKIADFLKA 62
+E + LI RNLQE LG DKLT+ L+ + +YWGTATTG+PHV Y VPM KIADFL+A
Sbjct: 17 KETRELILRNLQESLGVDKLTKQLETPGKVPHVYWGTATTGKPHVGYLVPMRKIADFLQA 76
Query: 63 GCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQL 122
G +VTILFADLHAYLDNMK+ WELL R YYE IKA+L S+ VP+E+L F +GTEYQL
Sbjct: 77 GLKVTILFADLHAYLDNMKSSWELLKCRVIYYENVIKALLQSLDVPIEQLYFKKGTEYQL 136
Query: 123 SKEYTLDVYRLSSVVTEHDAKKAGAEVVK---------------PTLDEEYLKVDAQFGG 167
S+EYT DV RLS+ V++ DA KAGAEVVK LDE+YLKVD QFGG
Sbjct: 137 SREYTDDVLRLSAQVSQRDALKAGAEVVKQVESPLLSGLLYPLLQALDEQYLKVDGQFGG 196
Query: 168 VDQRKIFAMSEKFLRLIRVKGN---INQAVDDVTPSKL-DIRVGHIVEVSRHPDADALYV 223
VDQRKIF ++E+ L +++ +N V +T +K+ ++V P+ +
Sbjct: 197 VDQRKIFILAEEQLPKLKLGKRWHLMNPMVPGLTGTKMSSSEEDSKIDVLDEPEKVRSKI 256
Query: 224 EKIDVGEDEPRTIVSGLVNFV 244
D+P V NFV
Sbjct: 257 MGAACSRDQPDNGVLSFYNFV 277
Score = 62.5 bits (145), Expect = 5e-10
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
Query: 21 DDKLTEILKQRDLKIYWGTATTGRPHVAYFVPMLKIADFLKAG---CEVTILFADLHAYL 77
D L ++ Q+ L + + GR H+ + P+LKI + AG TIL + L A+L
Sbjct: 392 DRVLADVSPQKPLHLMFIAPGKGRFHLGFIAPLLKIKEISDAGGVPVIATILVSPLEAFL 451
Query: 78 DNMKAPWELLALRTQYYEAAIKAMLTSIGVP-LEKLKFVRGTEYQLSKEYTLDVYRLSSV 136
DN K W + R Y+ +++ + + L K++ + L +EY LD Y+++S
Sbjct: 452 DNEKVAWAAIQSRAVYFREMFISLIKHLKLDGLVKVEIAGEHDKYLDREYVLDFYKMASA 511
Query: 137 VTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQRKIFAMSEKFLRL 183
V+ ++ + L ++AQ D I A S+ F L
Sbjct: 512 VSRDESTVCDGNSLSGNLVPLIYALNAQMTRPDILIIGADSQVFADL 558
>AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA
synthetase (cytoplasmic)protein.
Length = 722
Score = 227 bits (556), Expect = 7e-60
Identities = 131/261 (50%), Positives = 166/261 (63%), Gaps = 21/261 (8%)
Query: 5 QEKKHLITRNLQEVLGDDKLTEILKQ--RDLKIYWGTATTGRPHVAYFVPMLKIADFLKA 62
+E + LI RNLQE LG DKLT+ L+ + +YWGTATTG+PHV Y VPM KIADFL+A
Sbjct: 17 KETRELILRNLQESLGVDKLTKQLETPGKVPHVYWGTATTGKPHVGYLVPMRKIADFLQA 76
Query: 63 GCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQL 122
G +VTILFADLHAYLDNMK+ WELL R YYE IKA+L S+ VP+E+L F +GTEYQL
Sbjct: 77 GLKVTILFADLHAYLDNMKSSWELLKCRVIYYENVIKALLQSLDVPIEQLYFKKGTEYQL 136
Query: 123 SKEYTLDVYRLSSVVTEHDAKKAGAEVVK---------------PTLDEEYLKVDAQFGG 167
S+EYT DV RLS+ V++ DA KAGAEVVK LDE+YLKVD QFGG
Sbjct: 137 SREYTDDVLRLSAQVSQRDALKAGAEVVKQVESPLLSGLLYPLLQALDEQYLKVDGQFGG 196
Query: 168 VDQRKIFAMSEKFLRLIRVKGN---INQAVDDVTPSKL-DIRVGHIVEVSRHPDADALYV 223
VDQRKIF ++E+ L +++ +N V +T +K+ ++V P+ +
Sbjct: 197 VDQRKIFILAEEQLPKLKLGKRWHLMNPMVPGLTGTKMSSSEEDSKIDVLDEPEKVRSKI 256
Query: 224 EKIDVGEDEPRTIVSGLVNFV 244
D+P V NFV
Sbjct: 257 MGAACSRDQPDNGVLSFYNFV 277
Score = 62.5 bits (145), Expect = 5e-10
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
Query: 21 DDKLTEILKQRDLKIYWGTATTGRPHVAYFVPMLKIADFLKAG---CEVTILFADLHAYL 77
D L ++ Q+ L + + GR H+ + P+LKI + AG TIL + L A+L
Sbjct: 392 DRVLADVSPQKPLHLMFIAPGKGRFHLGFIAPLLKIKEISDAGGVPVIATILVSPLEAFL 451
Query: 78 DNMKAPWELLALRTQYYEAAIKAMLTSIGVP-LEKLKFVRGTEYQLSKEYTLDVYRLSSV 136
DN K W + R Y+ +++ + + L K++ + L +EY LD Y+++S
Sbjct: 452 DNEKVAWAAIQSRAVYFREMFISLIKHLKLDGLVKVEIAGEHDKYLDREYVLDFYKMASA 511
Query: 137 VTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQRKIFAMSEKFLRL 183
V+ ++ + L ++AQ D I A S+ F L
Sbjct: 512 VSRDESTVCDGNSLSGNLVPLIYALNAQMTRPDILIIGADSQVFADL 558
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical
protein F58B3.5 protein.
Length = 917
Score = 164 bits (399), Expect = 8e-41
Identities = 81/145 (55%), Positives = 103/145 (71%), Gaps = 3/145 (2%)
Query: 195 DDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDV 254
D + +LD+RVG I++ +HPDADALYVE+IDVGE PRT+VSGLV VP+++MQ+R V
Sbjct: 753 DTIDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRLV 812
Query: 255 VVLCNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVL 314
VVLCNLK AKMRGVES+ MV+CAS P +VE + P +K G +V Y T PDE L
Sbjct: 813 VVLCNLKPAKMRGVESRAMVMCAS--SPDKVEIMEVPADSKPGTPVVCPPY-THRPDEQL 869
Query: 315 NPKKKVWEKLQADLKTNDNLTAVWQ 339
NPKKK+WE + DLK + A W+
Sbjct: 870 NPKKKIWETVAEDLKVSAEGFAEWK 894
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 77 LDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQLSKEYTLDVYRLSSV 136
+ N++ ELL + +Y+E I+ + S ++ K + + K Y ++ R+ V
Sbjct: 40 IGNLRDAEELLIKKQEYFELRIEQEVESAKKYMKTNKKMALAALRKKKHYEQELSRIDGV 99
Query: 137 VTEHDAKKAGAEVV 150
+T+ +A++ E V
Sbjct: 100 LTKLEAQRTALENV 113
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 28.3 bits (60), Expect = 9.1
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 207 GHIVEVSRHPD------ADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVLCNL 260
G ++E++ P+ A+ E++ + E+EP V+G +E +D + V N
Sbjct: 135 GDVMEITEEPNGKSEDTANGTVTEEV-LDEEEPEPSVNGTTEIATEKEPEDSSMPVEQNG 193
Query: 261 KAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLNPKKKV 320
K K R VE + DE +++ P K K D V+ E D +K++
Sbjct: 194 KGVK-RPVECIELD-DDDDDEIQEISTPAPAKKAKIDD---VKATSVPEEDNNEQAQKRL 248
Query: 321 WEKLQADLK 329
+KL+ +K
Sbjct: 249 LDKLEEYVK 257
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 28.3 bits (60), Expect = 9.1
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 6/151 (3%)
Query: 113 KFVRGTEYQLSKEYTLDVYRLS--SVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQ 170
K T + KEY + + +S + + +++PT Y+ + + D
Sbjct: 505 KSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNEESLTDF 564
Query: 171 RKIFAMSEKFLRLIRVKGNINQAVDDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGE 230
RK +K + NI DV S VG + + AD +++ I+VGE
Sbjct: 565 RKGIRSQQKRANVASTIANIGTVAVDVPRSDKTELVGRKKKKRKEKAADEIHL--IEVGE 622
Query: 231 --DEPRTIVSGLVNFVPIEEMQDRDVVVLCN 259
R +V I+ D D +C+
Sbjct: 623 HVQSSRRPSIAMVTEGKIDSSSDSDQEEICD 653
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 28.3 bits (60), Expect = 9.1
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 6/151 (3%)
Query: 113 KFVRGTEYQLSKEYTLDVYRLS--SVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQ 170
K T + KEY + + +S + + +++PT Y+ + + D
Sbjct: 526 KSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNEESLTDF 585
Query: 171 RKIFAMSEKFLRLIRVKGNINQAVDDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGE 230
RK +K + NI DV S VG + + AD +++ I+VGE
Sbjct: 586 RKGIRSQQKRANVASTIANIGTVAVDVPRSDKTELVGRKKKKRKEKAADEIHL--IEVGE 643
Query: 231 --DEPRTIVSGLVNFVPIEEMQDRDVVVLCN 259
R +V I+ D D +C+
Sbjct: 644 HVQSSRRPSIAMVTEGKIDSSSDSDQEEICD 674
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 28.3 bits (60), Expect = 9.1
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 6/151 (3%)
Query: 113 KFVRGTEYQLSKEYTLDVYRLS--SVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQ 170
K T + KEY + + +S + + +++PT Y+ + + D
Sbjct: 526 KSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNEESLTDF 585
Query: 171 RKIFAMSEKFLRLIRVKGNINQAVDDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGE 230
RK +K + NI DV S VG + + AD +++ I+VGE
Sbjct: 586 RKGIRSQQKRANVASTIANIGTVAVDVPRSDKTELVGRKKKKRKEKAADEIHL--IEVGE 643
Query: 231 --DEPRTIVSGLVNFVPIEEMQDRDVVVLCN 259
R +V I+ D D +C+
Sbjct: 644 HVQSSRRPSIAMVTEGKIDSSSDSDQEEICD 674
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 28.3 bits (60), Expect = 9.1
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 207 GHIVEVSRHPD------ADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVLCNL 260
G ++E++ P+ A+ E++ + E+EP V+G +E +D + V N
Sbjct: 135 GDVMEITEEPNGKSEDTANGTVTEEV-LDEEEPEPSVNGTTEIATEKEPEDSSMPVEQNG 193
Query: 261 KAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLNPKKKV 320
K K R VE + DE +++ P K K D V+ E D +K++
Sbjct: 194 KGVK-RPVECIELD-DDDDDEIQEISTPAPAKKAKIDD---VKATSVPEEDNNEQAQKRL 248
Query: 321 WEKLQADLK 329
+KL+ +K
Sbjct: 249 LDKLEEYVK 257
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 28.3 bits (60), Expect = 9.1
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 6/151 (3%)
Query: 113 KFVRGTEYQLSKEYTLDVYRLS--SVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQ 170
K T + KEY + + +S + + +++PT Y+ + + D
Sbjct: 526 KSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNEESLTDF 585
Query: 171 RKIFAMSEKFLRLIRVKGNINQAVDDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGE 230
RK +K + NI DV S VG + + AD +++ I+VGE
Sbjct: 586 RKGIRSQQKRANVASTIANIGTVAVDVPRSDKTELVGRKKKKRKEKAADEIHL--IEVGE 643
Query: 231 --DEPRTIVSGLVNFVPIEEMQDRDVVVLCN 259
R +V I+ D D +C+
Sbjct: 644 HVQSSRRPSIAMVTEGKIDSSSDSDQEEICD 674
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 9.1
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 6/151 (3%)
Query: 113 KFVRGTEYQLSKEYTLDVYRLS--SVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVDQ 170
K T + KEY + + +S + + +++PT Y+ + + D
Sbjct: 526 KSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNEESLTDF 585
Query: 171 RKIFAMSEKFLRLIRVKGNINQAVDDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGE 230
RK +K + NI DV S VG + + AD +++ I+VGE
Sbjct: 586 RKGIRSQQKRANVASTIANIGTVAVDVPRSDKTELVGRKKKKRKEKAADEIHL--IEVGE 643
Query: 231 --DEPRTIVSGLVNFVPIEEMQDRDVVVLCN 259
R +V I+ D D +C+
Sbjct: 644 HVQSSRRPSIAMVTEGKIDSSSDSDQEEICD 674
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,941,254
Number of Sequences: 27539
Number of extensions: 379256
Number of successful extensions: 993
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 14
length of query: 365
length of database: 12,573,161
effective HSP length: 82
effective length of query: 283
effective length of database: 10,314,963
effective search space: 2919134529
effective search space used: 2919134529
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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