Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001525-TA|BGIBMGA001525-PA|IPR008994|Nucleic
acid-binding, OB-fold, IPR002307|Tyrosyl-tRNA synthetase, class Ib,
IPR002547|t-RNA-binding region, IPR002305|Aminoacyl-tRNA synthetase,
class Ib
(365 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met... 169 3e-42
At2g40660.1 68415.m05017 tRNA-binding region domain-containing p... 132 4e-31
At3g59980.1 68416.m06696 tRNA-binding region domain-containing p... 124 7e-29
At2g33840.1 68415.m04153 tRNA synthetase class I (W and Y) famil... 44 2e-04
At1g28350.1 68414.m03483 tRNA synthetase class I (W and Y) famil... 41 0.001
At2g16485.1 68415.m01889 expressed protein ; expression supporte... 35 0.098
At1g03080.1 68414.m00282 kinase interacting family protein simil... 31 0.92
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 31 1.2
At5g44730.2 68418.m05482 haloacid dehalogenase-like hydrolase fa... 30 2.1
At5g44730.1 68418.m05481 haloacid dehalogenase-like hydrolase fa... 30 2.1
At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containi... 29 3.7
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /... 29 3.7
At5g52290.1 68418.m06489 hypothetical protein 29 4.9
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 29 4.9
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 29 6.5
At3g07020.2 68416.m00834 UDP-glucose:sterol glucosyltransferase ... 29 6.5
At3g07020.1 68416.m00833 UDP-glucose:sterol glucosyltransferase ... 29 6.5
At2g40400.2 68415.m04982 expressed protein similar to GI:7572912... 29 6.5
At2g40400.1 68415.m04981 expressed protein similar to GI:7572912... 29 6.5
At5g13940.1 68418.m01630 hypothetical protein 28 8.5
At2g39330.1 68415.m04828 jacalin lectin family protein similar t... 28 8.5
At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR ... 28 8.5
>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
methionyl-tRNA synthetase, putative / MetRS, putative
similar to methionyl-tRNA synthetase [Oryza sativa]
GI:4091008; contains Pfam profiles PF00133: tRNA
synthetases class I (I, L, M and V), PF01588: Putative
tRNA binding domain
Length = 797
Score = 169 bits (411), Expect = 3e-42
Identities = 81/144 (56%), Positives = 106/144 (73%), Gaps = 1/144 (0%)
Query: 196 DVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVV 255
++T ++LDIRVG IV+ +HP ADALYVE+IDVG E RT+VSGLV ++P+EEMQ+R V
Sbjct: 633 EITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVC 692
Query: 256 VLCNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLN 315
VLCNLK AKMR + S+ MVL AS + +VE + PPK G+R+ ++ GEPD+VLN
Sbjct: 693 VLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFE-GEPDDVLN 751
Query: 316 PKKKVWEKLQADLKTNDNLTAVWQ 339
PKKKVWE L DL T +NL A ++
Sbjct: 752 PKKKVWETLLVDLNTKENLVACYK 775
>At2g40660.1 68415.m05017 tRNA-binding region domain-containing
protein similar to SP|Q12904 Multisynthetase complex
auxiliary component p43 [Contains: Endothelial-monocyte
activating polypeptide II (EMAP-II) (Small inducible
cytokine subfamily E member 1)] {Homo sapiens}; contains
Pfam profile PF01588: Putative tRNA binding domain
Length = 389
Score = 132 bits (319), Expect = 4e-31
Identities = 66/144 (45%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Query: 196 DVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVV 255
+++ S L+I+VG I + +HP AD+L VE+IDVGED+ R +VSGL F E++ +R V
Sbjct: 226 ELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEDKVRQVVSGLAKFCSPEDLTNRLVA 285
Query: 256 VLCNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRIVVEEYDTGEPDEVLN 315
++ N+K K+R V S+G+VLCAS ++ VEPLLPP G K G+R+ + G+P++VLN
Sbjct: 286 LITNVKPGKLRDVMSQGLVLCASSEDHSVVEPLLPPAGAKPGERVSFSGIE-GKPEDVLN 344
Query: 316 PKKKVWEKLQADLKTNDNLTAVWQ 339
PKKK EK+ L T++N A ++
Sbjct: 345 PKKKQLEKITPGLYTDENGVATYK 368
>At3g59980.1 68416.m06696 tRNA-binding region domain-containing
protein similar to SP|O54873 Multisynthetase complex
auxiliary component p43 [Contains: Endothelial-monocyte
activating polypeptide II (EMAP-II) (Small inducible
cytokine subfamily E member 1)] {Cricetulus griseus};
contains Pfam profile PF01588: Putative tRNA binding
domain
Length = 273
Score = 124 bits (300), Expect = 7e-29
Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 198 TPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVL 257
T + LDI+VG IV+ +H +AD+LYVE++D+GE EPR I SGLV +VP++ +Q VVVL
Sbjct: 105 TANLLDIKVGRIVKAWQHEEADSLYVEEVDIGEAEPRIICSGLVKYVPLDLLQGASVVVL 164
Query: 258 CNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDRI-VVEEYDTGEPDEVLNP 316
NLK MRGV+S GM+L AS + VE L+PP+G+ GDR+ E D + E P
Sbjct: 165 ANLKPRNMRGVKSCGMLLAASDAAHENVELLVPPEGSVPGDRVWFGNEEDLEQLPEPAPP 224
Query: 317 ----KKKVWEKLQADLKTNDNLTAVWQVH 341
KKK+WE +Q LKT+ + ++ + H
Sbjct: 225 NKVQKKKMWELVQPLLKTDASGVSMLKEH 253
>At2g33840.1 68415.m04153 tRNA synthetase class I (W and Y) family
protein similar to SP|P54577 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosyl--tRNA ligase) (TyrRS) {Homo sapiens};
contains Pfam profile PF00579: tRNA synthetases class I
(W and Y)
Length = 385
Score = 44.0 bits (99), Expect = 2e-04
Identities = 55/206 (26%), Positives = 103/206 (50%), Gaps = 30/206 (14%)
Query: 6 EKKHLITRNL-QEVLGDDKLTEILKQRDLKI-YWGTATTGRPHVAYFV-PMLKIADFLKA 62
EK++ I R++ +E + +++L +L ++ I Y G +GR H+A V ++ + A
Sbjct: 40 EKRYKIVRSIGEECIQEEELKNLLAKKAAPICYDGFEPSGRMHIAQGVMKVINVNKMTSA 99
Query: 63 GCEVTILFADLHAYLDNMKAPWELLALRT--QYYEAAIKAMLTSIGVPLEKLKFVRGTEY 120
GC V I AD A L+N K +L +R +Y++ KA G+ +K++F+ +E
Sbjct: 100 GCRVKIWIADWFAQLNN-KMGGDLKKIRVVGEYFQEIWKA----AGMDNDKVEFLWSSEE 154
Query: 121 QLSK--EY---TLDVYRLSSVV-----------TEHDAKKAGAEVVKPTL---DEEYLKV 161
SK +Y +D+ R + + +E D A A+++ P + D +L+
Sbjct: 155 INSKADKYWPLVMDIARKNKLPRILRCVQIMGRSETDELSA-AQILYPCMQCADIFFLEA 213
Query: 162 DAQFGGVDQRKIFAMSEKFLRLIRVK 187
D G+DQRK+ ++ ++ I+ K
Sbjct: 214 DICQLGMDQRKVNVLAREYCDDIKRK 239
>At1g28350.1 68414.m03483 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 824
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MATWQEKKHLITRNL-QEVLGDDKLTEILKQRDLKI-YWGTATTGRPHVAYFV-PMLKIA 57
M+ E K+ I R++ +E + +D+L +L ++ I Y G +GR H+A V + +
Sbjct: 475 MSEEAEMKYKIVRSIGEECIQEDELKNLLAKKPAPICYDGFEPSGRMHIAQGVMKVTNVN 534
Query: 58 DFLKAGCEVTILFADLHAYLDN 79
AGC+V I AD A L+N
Sbjct: 535 KLTSAGCQVKIWIADWFAQLNN 556
>At2g16485.1 68415.m01889 expressed protein ; expression supported
by MPSS
Length = 617
Score = 34.7 bits (76), Expect = 0.098
Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 21/240 (8%)
Query: 134 SSVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGG--VDQRKIFAMSEK----FLRLIRVK 187
SSVV E ++AGA +VK EE +A G +++ K +M E+ L + V
Sbjct: 117 SSVVGEGREEEAGASIVK----EEDFVAEANLSGDRLEENKEVSMEEEPSSHELSVCEVN 172
Query: 188 GNINQAVDDVTPSKLDIRVGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIE 247
G + ++ I G + D ++ EK+DV E+E + LVN + I
Sbjct: 173 GVDSLNDEENREVGEQIVCGSMGGEEIESDLESKK-EKVDVIEEETTAQAASLVNAIEIP 231
Query: 248 EMQDRDVVVLCNLK--AAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTK-AGDRIVVEE 304
+ D++V + +++ +G++ G +DE + V+ L +G K D E
Sbjct: 232 D--DKEVACVAGFTEISSQDKGLDESGN---GFLDE-EPVKELQIGEGAKDLTDGDAKEG 285
Query: 305 YDTGEPDEVLNPKKKVWEKLQADLKTNDNL-TAVWQVHDAIRTVEDRQLAQNSPEEGYSG 363
D E + + KK E+ + D T + T +VHD + D+ + ++ ++G
Sbjct: 286 VDVTEDEMDIQVLKKSKEEEKVDSTTELEIETMRLEVHDVATEMSDKTVISSAVVTQFTG 345
>At1g03080.1 68414.m00282 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 31.5 bits (68), Expect = 0.92
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 248 EMQDRDVVVLCNLKAAKMRGVESKGMVLCASVDEPKQVEPLLPPKGTKAGDR-IVVEEYD 306
EM +D+V L + G+ ++ +L D + + PPKG + +VV++ +
Sbjct: 1495 EMITKDIV-LDQVSDCSSYGISTRD-ILKIEDDHSLEAKSQNPPKGKSLSEESLVVDKLE 1552
Query: 307 TGE----PDEVLNPKKKVWEKLQADLKTNDNL-TAVWQVHDAIRTVEDRQLAQNSPEEGY 361
+ P++ N K+KV E+L +DL+ NL AV + + T E + + + E
Sbjct: 1553 ISDRFTDPNKDAN-KRKVLERLNSDLQKLSNLHVAVEDLKIKVETEEKDEKGKENEYETI 1611
Query: 362 SGR 364
G+
Sbjct: 1612 KGQ 1614
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 243 FVPIEEMQDRDVVVLCNLKAAKMRGVESKGMVLCASVDE-PKQVEPLLPPKGTKAGDRI- 300
+V E+++D + V+ +K KM G++ + + E KQ++ L + G +
Sbjct: 239 YVQAEKIRDNSIHVVEEMKI-KMTGIDEQTDKTQGEISELEKQIKALTQAREASMGGEVK 297
Query: 301 -VVEEYDT--GEPDEVLNPKKKVWEKLQADLKTNDNLTAVWQVHDAIRTVEDRQLAQNSP 357
+ ++ D+ E L+ + + LQ + K + + V + D ++VE+R A N
Sbjct: 298 ALSDKVDSLSNEVTRELSKLTNMEDTLQGEEKNAEKM--VHNIEDLKKSVEERASALNKC 355
Query: 358 EEG 360
+EG
Sbjct: 356 DEG 358
>At5g44730.2 68418.m05482 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|Q94915 Rhythmically
expressed gene 2 protein (DREG-2) {Drosophila
melanogaster}; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 255
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 144 KAGAEVVKPTLDEEYLKVDAQFGGVDQRKIFAMSEKFLRLIRVKGNI 190
KAG E + T ++ + ++ + FG +F S+ FLR R KG I
Sbjct: 88 KAGYEYDEETFEKIFRRIYSTFGSAAPYSVFQDSQPFLRWARRKGLI 134
>At5g44730.1 68418.m05481 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|Q94915 Rhythmically
expressed gene 2 protein (DREG-2) {Drosophila
melanogaster}; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 255
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 144 KAGAEVVKPTLDEEYLKVDAQFGGVDQRKIFAMSEKFLRLIRVKGNI 190
KAG E + T ++ + ++ + FG +F S+ FLR R KG I
Sbjct: 88 KAGYEYDEETFEKIFRRIYSTFGSAAPYSVFQDSQPFLRWARRKGLI 134
>At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containing
protein
Length = 564
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 206 VGHIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIE 247
+ H+VE+S P + + + DV ++E RT++ ++ P E
Sbjct: 287 IDHVVELSMDPFGNYIVQKLFDVSDEEQRTLIVSVLTSNPRE 328
>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24280) [Saccharomyces
cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
come from this gene
Length = 540
Score = 29.5 bits (63), Expect = 3.7
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 141 DAKKAGAEVVKPTLDEEYLKVDAQFGGVDQRKIFAMSEKFLRLIRVKGNINQAVDDVTPS 200
+++K +K L+E VD +++ M EK +++ + + + ++
Sbjct: 66 ESEKKALSDLKSKLEEAI--VDNTLLKTKKKESSPMKEKKEEVVKPEAEVEKKKEEAAEE 123
Query: 201 KLDI-RVGHIVEVSRHPDAD---ALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVV 256
K++ + V P A+ A+ E+I + ++E T+V + EE + DVV
Sbjct: 124 KVEEEKKSEAVVTEEAPKAETVEAVVTEEI-IPKEEVTTVVEKVEEETKEEEKKTEDVVT 182
Query: 257 LCNLKAAKMRGVESKGMVLCASVDEPKQV--EPLLPPKGTKAGDRIVVE-----EYDTGE 309
+KA + VE + SVD+ ++ PLLP KG ++ D I+++ ++ E
Sbjct: 183 E-EVKAETIE-VEDED----ESVDKDIELWGVPLLPSKGAESTDVILLKFLRARDFKVNE 236
Query: 310 PDEVLNPKKKVWEK 323
E+L K W K
Sbjct: 237 AFEMLKKTLK-WRK 249
>At5g52290.1 68418.m06489 hypothetical protein
Length = 1569
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 317 KKKVWEKLQADLKTNDNLTAVWQVHDAIRTVEDRQLAQN 355
K WEK Q D D+L + ++ D V+D+ ++QN
Sbjct: 1247 KDTFWEKDQPDFSVEDSLPGIPELEDWSFPVKDKFMSQN 1285
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 5 QEKKHLITRNLQEVLGDDKLTEILKQR---DLKIYWGTATTGRP 45
QE+ ++ NLQ+ L DDK + L R D ++YW A +P
Sbjct: 159 QERPYVPGENLQKWLTDDKARDQLVIRFGHDTEVYWNDARQKKP 202
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 282 PKQVEPLLPPKGTKAGDRIVVEEYDT---GEPDEVLNPKKKVWEKL 324
P P PP K + I YD GEP + KKKVWEKL
Sbjct: 112 PATTTPSPPPPVNKE-ETITSRIYDATAIGEPMAMGKDKKKVWEKL 156
>At3g07020.2 68416.m00834 UDP-glucose:sterol glucosyltransferase
(UGT80A2) identical to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 637
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 210 VEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVLCNLKAAKMRGVE 269
++++ + + A VE ++ G D+P I G + P++E + +++ L+ K RG+
Sbjct: 425 LDLASNYEPPAELVEWLEAG-DKPIYIGFGSL---PVQEPEKMTEIIVEALQRTKQRGII 480
Query: 270 SKGMVLCASVDEPKQVEPLL 289
+KG ++ EPK LL
Sbjct: 481 NKGWGGLGNLKEPKDFVYLL 500
>At3g07020.1 68416.m00833 UDP-glucose:sterol glucosyltransferase
(UGT80A2) identical to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 637
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 210 VEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVLCNLKAAKMRGVE 269
++++ + + A VE ++ G D+P I G + P++E + +++ L+ K RG+
Sbjct: 425 LDLASNYEPPAELVEWLEAG-DKPIYIGFGSL---PVQEPEKMTEIIVEALQRTKQRGII 480
Query: 270 SKGMVLCASVDEPKQVEPLL 289
+KG ++ EPK LL
Sbjct: 481 NKGWGGLGNLKEPKDFVYLL 500
>At2g40400.2 68415.m04982 expressed protein similar to GI:7572912
(At3g56140)[Arabidopsis thaliana]
Length = 735
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 290 PPKGTKAGDRIVVEEYDT---GEPDEVLNPKKKVWEKL 324
PP + + I YD GEP V KK+VWEKL
Sbjct: 110 PPPPVEKEEAITSRIYDASVLGEPMAVGKDKKRVWEKL 147
>At2g40400.1 68415.m04981 expressed protein similar to GI:7572912
(At3g56140)[Arabidopsis thaliana]
Length = 735
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 290 PPKGTKAGDRIVVEEYDT---GEPDEVLNPKKKVWEKL 324
PP + + I YD GEP V KK+VWEKL
Sbjct: 110 PPPPVEKEEAITSRIYDASVLGEPMAVGKDKKRVWEKL 147
>At5g13940.1 68418.m01630 hypothetical protein
Length = 395
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/50 (24%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 208 HIVEVSRHPDADALYVEKIDVGEDEPRTIVSGLVNFVPIEEMQDRDVVVL 257
H++++S + D+LY+E+I + ++ + +S L+ + I+E ++V+
Sbjct: 90 HMIDISIETEKDSLYIERIRI--EKLKLSLSNLMKKITIQEPTFERIIVV 137
>At2g39330.1 68415.m04828 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, myrosinase binding protein
[Brassica napus] GI:1711296; contains Pfam profile
PF01419 jacalin-like lectin domain
Length = 459
Score = 28.3 bits (60), Expect = 8.5
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 106 GVPLEKLKFVRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGAEVVKPTLDEEYLKVDAQF 165
G LE + E L E D Y + SV +D VV +L E K F
Sbjct: 206 GGKLETCRHGVKQERSLKFELNPDEY-IKSVEATYDKPDIFRNVVITSLTFETSKGRTSF 264
Query: 166 GGVDQRKIFAMSEKFLRLIRVKGNINQAVD 195
G K F + +K RL+ G A+D
Sbjct: 265 SGYKGGKKFKLEQKGRRLVGFHGKEGSAID 294
>At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1049
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 110 EKLKFVRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGAEVVKPTLDEEYLKVDAQFGGVD 169
++ + +G E Q++ E D+ LSS + + DAKK + VVK ++E +K + + G D
Sbjct: 19 QECELFQGVEDQVT-ELKRDLNLLSSFLKDADAKKHTSAVVKNCVEE--IK-EIIYDGED 74
Query: 170 QRKIFAMSEKFLRLIRVKGNINQ 192
+ F + + + +K +I +
Sbjct: 75 TIETFVLEQNLGKTSGIKKSIRR 97
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,584,313
Number of Sequences: 28952
Number of extensions: 360302
Number of successful extensions: 968
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 26
length of query: 365
length of database: 12,070,560
effective HSP length: 82
effective length of query: 283
effective length of database: 9,696,496
effective search space: 2744108368
effective search space used: 2744108368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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