Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001524-TA|BGIBMGA001524-PA|undefined
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   0.71 
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   2.2  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   2.9  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   2.9  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   3.8  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   3.8  
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    25   5.0  
SPBC30D10.04 |swi3||replication fork protection complex subunit ...    25   5.0  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    25   5.0  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    25   5.0  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   6.6  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   6.6  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    24   6.6  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    24   6.6  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   8.7  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    24   8.7  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    24   8.7  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 19  DLSRSEEIGHEKLIGSKDSEDQNEEKKGFDLQNKRINEGTKKYINCLDFISIVCTINFFT 78
           ++S SE I  +K+      +   EE       +++     +   + L  ISI+  +    
Sbjct: 313 EISPSEVI--DKIFNGNAYKRWTEENTSNFSNDQKAENPFEWATSLLKTISIIDEVELIN 370

Query: 79  GVLIPSSVKYFIKLPQGLRNSPLLVPLNDKAFSPLGGFVRYYKEVPPIPQS 129
            +LI  +++Y  +L  G +N  LL  L D  FS L  F  Y+   P   QS
Sbjct: 371 KILINYTMQYKKELEVGFKNVQLLQSLAD-IFSVL--FSEYFMIFPHSDQS 418


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 31  LIGSKDSEDQNEEKKGFDLQNKRINEGTKK--YINCLDFISIVCTINF 76
           ++G+K   +   ++    LQ ++I EG  K  Y + +D  + +  INF
Sbjct: 538 IVGNKTKVNHENDESDQALQEEKIEEGLLKNYYSSLIDSSTSISNINF 585


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 39  DQNEEKKGFDLQNKRINEGTKKYI 62
           D N  KK  +L+N++  +G K+YI
Sbjct: 185 DFNNLKKAIELRNQKFLQGIKEYI 208


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 24  EEIGHEKLIGSKDSEDQNEEKK 45
           EE   E L  SK+S+D+NEE K
Sbjct: 209 EEENDEILEDSKESKDENEENK 230


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 55  NEGTKKYINCLDFISIVCTINFFTG 79
           NE  ++Y NCLD +      N+ TG
Sbjct: 582 NERNQRYSNCLDVVLTHSASNWVTG 606


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 59  KKYINCLDFISIVCTINFFTGVLIPSSV 86
           KK++   DFI +VC I     +L+  S+
Sbjct: 282 KKFLKTFDFIGLVCVITGIVLILLGISL 309


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 20 LSRSEEIGHEKLIGSKDSEDQNEEKKGFDLQNK-RINEGTKKYINCLDFISIVCTINFFT 78
          L  SEE G  +   SKD++   EE+K    +NK +I  G  +     D+ ++V +    +
Sbjct: 9  LGTSEEDGTTQEANSKDTKGLKEERKRKKRKNKYKIPPGHTQQ----DWDALVASGKNLS 64

Query: 79 GVLIPSSV 86
          GV  P SV
Sbjct: 65 GVESPISV 72


>SPBC30D10.04 |swi3||replication fork protection complex subunit
          Swi3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 23 SEEIGHEKLIGSKDSED--QNEEKKGFDLQNKRINEGTKK 60
          + + G EKL+     E+  +NEE+K FDL  +   +  KK
Sbjct: 5  ASDSGVEKLVEENKREEVKKNEEEKEFDLGLEENPDSVKK 44


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 88  YFIKLPQGLRNSPLLVPLNDKAFSPLGGFVRY 119
           Y I      +N+       +K  +P+GGFVRY
Sbjct: 283 YRIGAGDDAKNASTDFDATEKRITPMGGFVRY 314


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 88  YFIKLPQGLRNSPLLVPLNDKAFSPLGGFVRY 119
           Y I      +N+       +K  +P+GGFVRY
Sbjct: 283 YRIGAGDDAKNASTDFDATEKRITPMGGFVRY 314


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 41  NEEKKGFDLQNKRINEGTKKYINCLDFISIVCTINFFTGVLIPSSVKYFIKLPQGLR 97
           + +KKG D  +K   +  + Y    D +S    ++F     +   +  +++ P G R
Sbjct: 499 SRKKKGLDAIDKAFLKALRNYPKAKDQLSKYKVLDFHPFDPVSKKITAYVEAPDGQR 555


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 27 GHEKLIGSKDSEDQNEEKKGFDLQNKRINEGTKKYIN 63
          G   L+   D E+    +  +D+ NK  N   K  +N
Sbjct: 56 GSPDLLSESDVENAKNNEHTYDIDNKNFNFEPKNSVN 92


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 7   PVTYATGETVFDDLSRSEEIGH 28
           P TY T E V DDL  S    H
Sbjct: 765 PYTYLTTEEVSDDLQSSHNNAH 786


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 1   MWKSVLPVTYATGETVFDDLSRSEEIGHEKLIG 33
           +W  +L ++      VF DL   EE+  ++  G
Sbjct: 299 LWSEILEISQTVDSLVFLDLKEKEELTDKESAG 331


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 8   VTYATGETVFDDLSRSEEIGHEKLIGS 34
           + +A   T FDD++ ++E+  + L+G+
Sbjct: 127 IEFAAAFTAFDDVNPTKEVVPDALVGT 153


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 87  KYFIKLPQGLRNSPLLVPLNDKAFSPLGGFVR 118
           +Y+ KL Q L+     + +ND++  P    VR
Sbjct: 42  RYYFKLSQTLKQDDRYIQINDESSEPTHEDVR 73


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 10  YATGETVFDDLSRSEEIGHEKL 31
           YA G  +F  LS   +IG +K+
Sbjct: 132 YAVGPLIFSPLSEVPQIGRQKI 153


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,166
Number of Sequences: 5004
Number of extensions: 32001
Number of successful extensions: 108
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 17
length of query: 130
length of database: 2,362,478
effective HSP length: 66
effective length of query: 64
effective length of database: 2,032,214
effective search space: 130061696
effective search space used: 130061696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)