GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001524-TA|BGIBMGA001524-PA|undefined
         (130 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   0.53 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   0.93 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   2.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   3.7  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 0.53
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 91  KLPQGLRNSPLLVPLNDKAFSPLGGFVRYYKEVPPI 126
           K    L N+P + P +  + SP GGF+   K +PP+
Sbjct: 185 KFISALVNAPSVSPASLPSISPSGGFLP--KWLPPL 218


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 0.93
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 94  QGLRNSPLLVPLNDKAFSPLGGFVRYYKEVPPIPQS 129
           QG    PLLVP+  +  S       Y     P P+S
Sbjct: 191 QGASPLPLLVPIPQRTASTASSASNYSPSQSPEPES 226


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 36  DSEDQNEEKKGFDLQNKRINEGTKK----YINC-LDFISI-----VCTINFFTGVLIPSS 85
           + E  +   K F   +K++N    K    Y N    F SI     V  I  F+G ++PS 
Sbjct: 42  NQEQWSSLNKNFQFIDKKLNNRNSKSRVFYENVNFQFGSILALFGVVQIYIFSGFIVPSG 101

Query: 86  VKYFI 90
           V Y I
Sbjct: 102 VVYKI 106


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 99  SPLLVPLNDKAFSP 112
           SPLL P ++ A+SP
Sbjct: 16  SPLLTPPHNPAYSP 29


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,964
Number of Sequences: 317
Number of extensions: 1521
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 130
length of database: 114,650
effective HSP length: 50
effective length of query: 80
effective length of database: 98,800
effective search space:  7904000
effective search space used:  7904000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)