Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001524-TA|BGIBMGA001524-PA|undefined
(130 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0246 + 19350362-19350442,19351250-19351383,19351847-193518... 29 0.91
11_06_0291 + 22008412-22012284 29 1.6
08_01_0340 - 3008124-3009176 29 1.6
04_03_0811 - 19909128-19912214 29 1.6
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 2.8
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 28 2.8
12_01_0931 + 9245777-9245806,9245972-9246065,9246188-9246220,924... 27 3.7
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 27 6.4
03_05_1061 + 30037069-30037074,30037638-30037715,30038687-300387... 27 6.4
12_01_0285 + 2120130-2121204,2122842-2123116 26 8.5
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 26 8.5
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53... 26 8.5
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 26 8.5
>05_04_0246 +
19350362-19350442,19351250-19351383,19351847-19351895,
19352503-19352667,19353358-19353414,19353524-19353598
Length = 186
Score = 29.5 bits (63), Expect = 0.91
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 4 SVLPVTYATGETVFDDLSRSEEIGHEKL 31
S +PVTYA G + DDL R + G+ ++
Sbjct: 87 SPIPVTYAGGVSTMDDLERIKRAGNSRV 114
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 22 RSEEIGHEKLIGSKDSEDQNEEKKGFDLQNKRINEGTKK 60
R EE HEK K+ E + EE+K + K EGT++
Sbjct: 455 RKEEPHHEKQEHKKEKEVKEEERKEEQNKEKEEREGTEE 493
>08_01_0340 - 3008124-3009176
Length = 350
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 14 ETVFDDLSRS--EEIGHEKLIGSKDSEDQNEEKKGFDLQNKRINEGTK 59
E V D+ + S +E G+E GS D ED E+ G L N +E TK
Sbjct: 303 EDVDDNTAGSLLKEDGYESATGSFDKEDTEEDSNG-SLHNGDADENTK 349
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 6 LPVTYATGETVFDDLSRSEEIGHEKLIGSKDSEDQNEEKKGFDLQNKRINEGT 58
L + + T + +F + + +G KL+ + +EDQ G + NK ++ GT
Sbjct: 270 LVINHLTEDEMFHEEQCLQNMGWIKLVCEQTTEDQKWHISGKCITNKEVSSGT 322
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.9 bits (59), Expect = 2.8
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 41 NEEKKGFDLQ-NKRINEGTKKYINCLDFISIVCTINFFTGVLIPSSVKYFIKLPQGLRNS 99
+E+ G+D + +++E Y+N F+ + IN+F G L+P S +KL + NS
Sbjct: 1341 DEDYSGYDYSLSAQLSEVRIVYLN--RFVQEI--INYFMG-LVPKSSDSVVKLKDNVTNS 1395
Query: 100 PLLVPLNDKAFSP 112
V D SP
Sbjct: 1396 EKWVSKTDMEGSP 1408
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 13 GETVFDDLSRSEEIGHEKLIGSKDSED 39
G+++FDDL S+ I H K + S S D
Sbjct: 943 GKSLFDDLFPSQNIDHPKKLSSSASAD 969
>12_01_0931 +
9245777-9245806,9245972-9246065,9246188-9246220,
9246393-9246539,9248002-9248132,9248289-9248426,
9248570-9248668,9249020-9249238
Length = 296
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 46 GFDLQNKRINEGTKKYINCLDFISIVCTINFFTGV 80
G D Q +EG + YIN D + + C+ N+F V
Sbjct: 67 GLDYQGHGKSEGLQGYINSFDDVVVDCS-NYFASV 100
>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 30 KLIGSKDSEDQNEEKKGFDLQNKRINEGTKKYINCL 65
K+IGS E Q + FD++++ ++ T++ I+ L
Sbjct: 1228 KIIGSNPDEQQKSFGRHFDMEDELVSRITRRSIDLL 1263
>03_05_1061 +
30037069-30037074,30037638-30037715,30038687-30038745,
30038823-30038907,30039206-30039294,30039384-30039446,
30039635-30039707,30040033-30040086,30040224-30040265,
30040609-30040674
Length = 204
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 30 KLIGSKDSEDQNEEKKGFDLQNKRINEGTKKYINCLDFISIVCTINFFT 78
KL D Q+E KK + K+ +K+ N ++++C I+FFT
Sbjct: 94 KLKHCLDPSSQDEHKK----KEKKSKHKSKRAANEAQLLNLMCEISFFT 138
>12_01_0285 + 2120130-2121204,2122842-2123116
Length = 449
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 99 SPLLVPLNDKAFSPLGGFVRYYKEVPPIPQS 129
S + P +D +PLGG +++ PP P S
Sbjct: 70 SGVAAPPDDDGTNPLGGAMKHMALAPPAPPS 100
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 26.2 bits (55), Expect = 8.5
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 26 IGHEKLIGSKDSEDQNEEKKGFDLQNKRINEGTKKYINCLDFISIVCTINFFTGVLIPSS 85
+GH L + D +Q F+LQN N GT + L + N FTG IP
Sbjct: 145 LGHNHLATTNDMFNQLTNLTTFNLQNNGFN-GTIDVLADLPLTDLNVANNQFTG-WIPDK 202
Query: 86 VK 87
+K
Sbjct: 203 LK 204
>05_01_0079 +
531617-531734,531987-532059,532152-532261,532400-532543,
532628-532736,532836-533182,533260-533333,533478-533782,
534168-534294,534385-534414,534589-534837
Length = 561
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 30 KLIGSKDSEDQNEEKKGFDLQNKRINEGTKKYINCLDFISIVCTINF 76
+L G+ D +D+ + GF + I T LDF + C I +
Sbjct: 369 RLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQY 415
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 13 GETVFDDLSRSEEIGHEKLIGSKDSEDQNEEKKGFDLQNKR 53
G+ DDL+ GH + +GS +S + + DL+ R
Sbjct: 498 GDVSLDDLNEGVRPGHSRFLGSYNSNEYDTGHYNEDLKKFR 538
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.139 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,197,295
Number of Sequences: 37544
Number of extensions: 173425
Number of successful extensions: 425
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 13
length of query: 130
length of database: 14,793,348
effective HSP length: 74
effective length of query: 56
effective length of database: 12,015,092
effective search space: 672845152
effective search space used: 672845152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
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