GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001524-TA|BGIBMGA001524-PA|undefined
         (130 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   7.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   7.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 61  YINCLDFISIVCTINFFTGVLIPSSVKY 88
           Y+  +D   ++C +  F  +L  ++V Y
Sbjct: 300 YVKAIDIYLVMCFVFVFAALLEYAAVNY 327


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 37 SEDQNEEKKGFDLQNKRINEGTKKYINCLDFIS 69
          ++D +EE+       K  ++G K Y   ++F++
Sbjct: 40 ADDSDEEELSARPSFKTFDKGPKNYTTPVNFVA 72


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 82  IPSSVKYFIKLPQGLRN 98
           IP   +  I LP G+RN
Sbjct: 322 IPEEKRMVIILPDGIRN 338


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,621
Number of Sequences: 429
Number of extensions: 2315
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 130
length of database: 140,377
effective HSP length: 51
effective length of query: 79
effective length of database: 118,498
effective search space:  9361342
effective search space used:  9361342
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)