Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001523-TA|BGIBMGA001523-PA|undefined
(69 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 69 1e-13
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 30 0.033
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 29 0.100
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 0.93
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 24 2.1
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 23 5.0
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 23 5.0
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 22 8.7
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex... 22 8.7
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 22 8.7
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 68.5 bits (160), Expect = 1e-13
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 1 MLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAE 60
++F +E++D +PFW P TEEE GE D N AK YM +VR RKGL ++++V+ AE
Sbjct: 934 LIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGLLVEQKIVEKAE 993
Query: 61 KQRTL 65
KQRTL
Sbjct: 994 KQRTL 998
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 30.3 bits (65), Expect = 0.033
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 1 MLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAE 60
M+F HW+V+ DP + + E G + A+ ++ R RKGL D ++ +
Sbjct: 912 MVFDHWQVVPGDPLDKSIKPKPL----EPARGSDLARDFLIKTRRRKGLVEDVSTTRYFD 967
Query: 61 KQ 62
++
Sbjct: 968 QE 969
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 28.7 bits (61), Expect = 0.100
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 16 RPCTEEEYLHWGEKYD 31
R TEEEY W EKYD
Sbjct: 806 RELTEEEYYEWKEKYD 821
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 0.93
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 8 VIDIDPFWRPCTEEE 22
VI +DPFW P EE+
Sbjct: 957 VIILDPFWNPYIEEQ 971
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 24.2 bits (50), Expect = 2.1
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 15 WRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKG-LATDKQLVQHAEKQRTLSKN 68
WR T + +KYD K Y D +R +G ++ L ++ R S++
Sbjct: 212 WRERTHNDRYRHRDKYDSGYFKKHYDDDMRFDQGHFQDERDLKKYVRTSRQYSRS 266
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 23.0 bits (47), Expect = 5.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 19 TEEEYLHWGE 28
T EEY+HW E
Sbjct: 169 TREEYVHWSE 178
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 23.0 bits (47), Expect = 5.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 4 SHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRA 36
S++EV++I+P P + Y+ + ++ V RA
Sbjct: 345 SYFEVVEIEPVEIPDSGAPYMQYDSEWLSVLRA 377
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 22.2 bits (45), Expect = 8.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 37 KAYMDSVRARKGLATDKQLVQHAEK 61
+A M ++RAR+ +AT+K + +K
Sbjct: 395 EAGMFAIRARRRVATEKDFLDAVQK 419
>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 22.2 bits (45), Expect = 8.7
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 21 EEYLHWGE 28
E+Y+HWGE
Sbjct: 168 EKYMHWGE 175
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 22.2 bits (45), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 39 YMDSVRARKGLATDKQLVQHAEKQRTL 65
Y +SV RKG++ ++ ++Q+TL
Sbjct: 91 YPNSVWERKGVSDQEENTSSVKRQKTL 117
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,101
Number of Sequences: 5004
Number of extensions: 10266
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 10
length of query: 69
length of database: 2,362,478
effective HSP length: 49
effective length of query: 20
effective length of database: 2,117,282
effective search space: 42345640
effective search space used: 42345640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)
- SilkBase 1999-2023 -