GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001523-TA|BGIBMGA001523-PA|undefined
         (69 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    69   1e-13
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    30   0.033
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    29   0.100
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   0.93 
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    24   2.1  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    23   5.0  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    23   5.0  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    22   8.7  
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex...    22   8.7  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    22   8.7  

>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 68.5 bits (160), Expect = 1e-13
 Identities = 33/65 (50%), Positives = 45/65 (69%)

Query: 1   MLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAE 60
           ++F  +E++D +PFW P TEEE    GE  D  N AK YM +VR RKGL  ++++V+ AE
Sbjct: 934 LIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGLLVEQKIVEKAE 993

Query: 61  KQRTL 65
           KQRTL
Sbjct: 994 KQRTL 998


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 30.3 bits (65), Expect = 0.033
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 1   MLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAE 60
           M+F HW+V+  DP  +    +      E   G + A+ ++   R RKGL  D    ++ +
Sbjct: 912 MVFDHWQVVPGDPLDKSIKPKPL----EPARGSDLARDFLIKTRRRKGLVEDVSTTRYFD 967

Query: 61  KQ 62
           ++
Sbjct: 968 QE 969


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 28.7 bits (61), Expect = 0.100
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 16  RPCTEEEYLHWGEKYD 31
           R  TEEEY  W EKYD
Sbjct: 806 RELTEEEYYEWKEKYD 821


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 8   VIDIDPFWRPCTEEE 22
           VI +DPFW P  EE+
Sbjct: 957 VIILDPFWNPYIEEQ 971


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 15  WRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKG-LATDKQLVQHAEKQRTLSKN 68
           WR  T  +     +KYD     K Y D +R  +G    ++ L ++    R  S++
Sbjct: 212 WRERTHNDRYRHRDKYDSGYFKKHYDDDMRFDQGHFQDERDLKKYVRTSRQYSRS 266


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 19  TEEEYLHWGE 28
           T EEY+HW E
Sbjct: 169 TREEYVHWSE 178


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 4   SHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRA 36
           S++EV++I+P   P +   Y+ +  ++  V RA
Sbjct: 345 SYFEVVEIEPVEIPDSGAPYMQYDSEWLSVLRA 377


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 37  KAYMDSVRARKGLATDKQLVQHAEK 61
           +A M ++RAR+ +AT+K  +   +K
Sbjct: 395 EAGMFAIRARRRVATEKDFLDAVQK 419


>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
           subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 21  EEYLHWGE 28
           E+Y+HWGE
Sbjct: 168 EKYMHWGE 175


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 39  YMDSVRARKGLATDKQLVQHAEKQRTL 65
           Y +SV  RKG++  ++     ++Q+TL
Sbjct: 91  YPNSVWERKGVSDQEENTSSVKRQKTL 117


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,101
Number of Sequences: 5004
Number of extensions: 10266
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 10
length of query: 69
length of database: 2,362,478
effective HSP length: 49
effective length of query: 20
effective length of database: 2,117,282
effective search space: 42345640
effective search space used: 42345640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)