BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001523-TA|BGIBMGA001523-PA|undefined (69 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 104 1e-23 SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0) 30 0.23 SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7 SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9 SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2) 26 4.9 SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4 SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4 SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4 SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4 SB_57254| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.5 SB_41919| Best HMM Match : IL8 (HMM E-Value=7.7) 25 8.5 SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12) 25 8.5 SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.5 SB_10786| Best HMM Match : PA (HMM E-Value=2.4e-16) 25 8.5 SB_846| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.5 >SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) Length = 549 Score = 104 bits (249), Expect = 1e-23 Identities = 42/67 (62%), Positives = 55/67 (82%) Query: 1 MLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAE 60 ++FSHWE ID+DP+W P TEEEY+H+GEK D NRA+ YM+S+R RKGL +++ V+HAE Sbjct: 483 LMFSHWEAIDLDPYWVPSTEEEYMHFGEKADSENRARKYMNSIRRRKGLYVEEKTVEHAE 542 Query: 61 KQRTLSK 67 KQRTL K Sbjct: 543 KQRTLKK 549 >SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0) Length = 375 Score = 30.3 bits (65), Expect = 0.23 Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 13 PFWRPCTEEEYLHWGEKYDGVN 34 P W P E Y+ WG KYD N Sbjct: 296 PAWTPKFENIYIGWGHKYDASN 317 >SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1554 Score = 26.2 bits (55), Expect = 3.7 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 7 EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43 E+ID P WR ++ ++ W E D + A+M+S+ Sbjct: 1141 EIIDTSPVKPYLWRRYIDDNFMIWTEGEDALRDFMAHMNSI 1181 >SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1353 Score = 25.8 bits (54), Expect = 4.9 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Query: 7 EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43 E+ID P WR ++ ++ W E D + + A+M+S+ Sbjct: 56 EIIDSSPVKPYLWRRYIDDIFMIWTEGEDALRQFMAHMNSI 96 >SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2) Length = 623 Score = 25.8 bits (54), Expect = 4.9 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Query: 7 EVID---IDPF-WRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43 E+ID + PF WR ++ ++ W E D + A+M+S+ Sbjct: 479 EIIDSSPVKPFLWRRYIDDIFMIWTEGEDALREFMAHMNSI 519 >SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 521 Score = 25.4 bits (53), Expect = 6.4 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 7 EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43 E+ID P WR ++ ++ W E D + A+M+S+ Sbjct: 98 EIIDSSPVKPYLWRRYIDDIFMIWTEGEDALREFMAHMNSI 138 >SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 521 Score = 25.4 bits (53), Expect = 6.4 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 7 EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43 E+ID P WR ++ ++ W E D + A+M+S+ Sbjct: 148 EIIDSSPVKPYLWRRYIDDIFMIWTEGEDALREFMAHMNSI 188 >SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 585 Score = 25.4 bits (53), Expect = 6.4 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 7 EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43 E+ID P WR ++ ++ W E D + A+M+S+ Sbjct: 398 EIIDSSPVKPYLWRRYIDDIFMIWTEGEDALREFMAHMNSI 438 >SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 250 Score = 25.4 bits (53), Expect = 6.4 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 8 VIDIDPFWRPCTEEEYLHWGEKYDGVNRAK 37 +I++ P R CT+EE + + E YD V+ + Sbjct: 130 LINVSPIGRNCTQEERIEFFE-YDKVHNVR 158 >SB_57254| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 237 Score = 25.0 bits (52), Expect = 8.5 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 7 EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43 E+ID P WR ++ ++ W + D + A+M+S+ Sbjct: 183 EIIDSSPVKPYLWRRYIDDIFMIWTDSEDALREFMAHMNSI 223 >SB_41919| Best HMM Match : IL8 (HMM E-Value=7.7) Length = 155 Score = 25.0 bits (52), Expect = 8.5 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 7 EVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLA----TDKQLVQ 57 +++D F P E L E + V AKA++D V R+ +A TD Q +Q Sbjct: 74 DLMDSPVFLAPRVNEGLLDPRESKESVATAKAFLDLVERREIVASLALTDPQALQ 128 >SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12) Length = 275 Score = 25.0 bits (52), Expect = 8.5 Identities = 12/36 (33%), Positives = 22/36 (61%) Query: 28 EKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQR 63 +KY +N+ K Y+ ++ +G T LVQ+A ++R Sbjct: 101 KKYVLLNKPKNYITTMDDDRGRKTVMDLVQNAARER 136 >SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 542 Score = 25.0 bits (52), Expect = 8.5 Identities = 12/45 (26%), Positives = 19/45 (42%) Query: 25 HWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQRTLSKNK 69 HW + +R K MD A + +QL Q+ ++ NK Sbjct: 324 HWSTVVESDDRGKYIMDGEEAERLNEVHQQLEQYTSDKKNPDPNK 368 >SB_10786| Best HMM Match : PA (HMM E-Value=2.4e-16) Length = 270 Score = 25.0 bits (52), Expect = 8.5 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 11 IDPFWRPCTEEEYLHWGEKYDGV 33 ++P WRP +L WG + GV Sbjct: 196 VEPDWRPRRTIVFLSWGAEEPGV 218 >SB_846| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 124 Score = 25.0 bits (52), Expect = 8.5 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 5/29 (17%) Query: 15 WRPCTEEEYLHW-----GEKYDGVNRAKA 38 W P +Y HW GE+Y G+ A Sbjct: 95 WPPAVNNQYKHWQKAKIGERYPGIKGGAA 123 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.132 0.426 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,309,181 Number of Sequences: 59808 Number of extensions: 75245 Number of successful extensions: 161 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 156 Number of HSP's gapped (non-prelim): 15 length of query: 69 length of database: 16,821,457 effective HSP length: 48 effective length of query: 21 effective length of database: 13,950,673 effective search space: 292964133 effective search space used: 292964133 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 52 (25.0 bits)
- SilkBase 1999-2023 -