GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001523-TA|BGIBMGA001523-PA|undefined
         (69 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                104   1e-23
SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)                30   0.23 
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   3.7  
SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)                     26   4.9  
SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   6.4  
SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_57254| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_41919| Best HMM Match : IL8 (HMM E-Value=7.7)                       25   8.5  
SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)                    25   8.5  
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_10786| Best HMM Match : PA (HMM E-Value=2.4e-16)                    25   8.5  
SB_846| Best HMM Match : No HMM Matches (HMM E-Value=.)                25   8.5  

>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score =  104 bits (249), Expect = 1e-23
 Identities = 42/67 (62%), Positives = 55/67 (82%)

Query: 1   MLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAE 60
           ++FSHWE ID+DP+W P TEEEY+H+GEK D  NRA+ YM+S+R RKGL  +++ V+HAE
Sbjct: 483 LMFSHWEAIDLDPYWVPSTEEEYMHFGEKADSENRARKYMNSIRRRKGLYVEEKTVEHAE 542

Query: 61  KQRTLSK 67
           KQRTL K
Sbjct: 543 KQRTLKK 549


>SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)
          Length = 375

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 13  PFWRPCTEEEYLHWGEKYDGVN 34
           P W P  E  Y+ WG KYD  N
Sbjct: 296 PAWTPKFENIYIGWGHKYDASN 317


>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 7    EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43
            E+ID  P     WR   ++ ++ W E  D +    A+M+S+
Sbjct: 1141 EIIDTSPVKPYLWRRYIDDNFMIWTEGEDALRDFMAHMNSI 1181


>SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 7  EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43
          E+ID  P     WR   ++ ++ W E  D + +  A+M+S+
Sbjct: 56 EIIDSSPVKPYLWRRYIDDIFMIWTEGEDALRQFMAHMNSI 96


>SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 623

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 7   EVID---IDPF-WRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43
           E+ID   + PF WR   ++ ++ W E  D +    A+M+S+
Sbjct: 479 EIIDSSPVKPFLWRRYIDDIFMIWTEGEDALREFMAHMNSI 519


>SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 7   EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43
           E+ID  P     WR   ++ ++ W E  D +    A+M+S+
Sbjct: 98  EIIDSSPVKPYLWRRYIDDIFMIWTEGEDALREFMAHMNSI 138


>SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 7   EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43
           E+ID  P     WR   ++ ++ W E  D +    A+M+S+
Sbjct: 148 EIIDSSPVKPYLWRRYIDDIFMIWTEGEDALREFMAHMNSI 188


>SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 7   EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43
           E+ID  P     WR   ++ ++ W E  D +    A+M+S+
Sbjct: 398 EIIDSSPVKPYLWRRYIDDIFMIWTEGEDALREFMAHMNSI 438


>SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 8   VIDIDPFWRPCTEEEYLHWGEKYDGVNRAK 37
           +I++ P  R CT+EE + + E YD V+  +
Sbjct: 130 LINVSPIGRNCTQEERIEFFE-YDKVHNVR 158


>SB_57254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 7   EVIDIDP----FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43
           E+ID  P     WR   ++ ++ W +  D +    A+M+S+
Sbjct: 183 EIIDSSPVKPYLWRRYIDDIFMIWTDSEDALREFMAHMNSI 223


>SB_41919| Best HMM Match : IL8 (HMM E-Value=7.7)
          Length = 155

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 7   EVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLA----TDKQLVQ 57
           +++D   F  P   E  L   E  + V  AKA++D V  R+ +A    TD Q +Q
Sbjct: 74  DLMDSPVFLAPRVNEGLLDPRESKESVATAKAFLDLVERREIVASLALTDPQALQ 128


>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
          Length = 275

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 28  EKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQR 63
           +KY  +N+ K Y+ ++   +G  T   LVQ+A ++R
Sbjct: 101 KKYVLLNKPKNYITTMDDDRGRKTVMDLVQNAARER 136


>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 25  HWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQRTLSKNK 69
           HW    +  +R K  MD   A +     +QL Q+   ++    NK
Sbjct: 324 HWSTVVESDDRGKYIMDGEEAERLNEVHQQLEQYTSDKKNPDPNK 368


>SB_10786| Best HMM Match : PA (HMM E-Value=2.4e-16)
          Length = 270

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 11  IDPFWRPCTEEEYLHWGEKYDGV 33
           ++P WRP     +L WG +  GV
Sbjct: 196 VEPDWRPRRTIVFLSWGAEEPGV 218


>SB_846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 5/29 (17%)

Query: 15  WRPCTEEEYLHW-----GEKYDGVNRAKA 38
           W P    +Y HW     GE+Y G+    A
Sbjct: 95  WPPAVNNQYKHWQKAKIGERYPGIKGGAA 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,181
Number of Sequences: 59808
Number of extensions: 75245
Number of successful extensions: 161
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 15
length of query: 69
length of database: 16,821,457
effective HSP length: 48
effective length of query: 21
effective length of database: 13,950,673
effective search space: 292964133
effective search space used: 292964133
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)