GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001523-TA|BGIBMGA001523-PA|undefined
         (69 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK023181-1|BAB14450.1|  857|Homo sapiens protein ( Homo sapiens ...   107   6e-24

>AK023181-1|BAB14450.1|  857|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13119 fis, clone NT2RP3002671, weakly similar to
           ELONGATION FACTOR 2. ).
          Length = 857

 Score =  107 bits (257), Expect = 6e-24
 Identities = 45/69 (65%), Positives = 58/69 (84%)

Query: 1   MLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAE 60
           ++FSHWE+I  DPFW P TEEEYLH+GEK D  N+A+ YM++VR RKGL  ++++V+HAE
Sbjct: 789 LVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAE 848

Query: 61  KQRTLSKNK 69
           KQRTLSKNK
Sbjct: 849 KQRTLSKNK 857


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,841,544
Number of Sequences: 224733
Number of extensions: 305121
Number of successful extensions: 1486
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1485
Number of HSP's gapped (non-prelim): 1
length of query: 69
length of database: 73,234,838
effective HSP length: 48
effective length of query: 21
effective length of database: 62,447,654
effective search space: 1311400734
effective search space used: 1311400734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)