GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001523-TA|BGIBMGA001523-PA|undefined
         (69 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    87   2e-18
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    87   2e-18
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    28   0.92 
AC024755-3|AAL65801.1|  231|Caenorhabditis elegans Hypothetical ...    25   8.6  

>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 39/67 (58%), Positives = 47/67 (70%)

Query: 3   FSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQ 62
           FSHW+VID DP+W P T EE   +G K D  N A+ YMD+VR RKGL T+  +V+ AEKQ
Sbjct: 639 FSHWQVIDEDPYWTPSTLEEIEEFGLKGDSPNHARGYMDAVRRRKGLPTEDLIVESAEKQ 698

Query: 63  RTLSKNK 69
           R L KNK
Sbjct: 699 RNLKKNK 705


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 39/67 (58%), Positives = 47/67 (70%)

Query: 3   FSHWEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQ 62
           FSHW+VID DP+W P T EE   +G K D  N A+ YMD+VR RKGL T+  +V+ AEKQ
Sbjct: 828 FSHWQVIDEDPYWTPSTLEEIEEFGLKGDSPNHARGYMDAVRRRKGLPTEDLIVESAEKQ 887

Query: 63  RTLSKNK 69
           R L KNK
Sbjct: 888 RNLKKNK 894


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 18  CTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQ-RTLSKN 68
           C +EE+  W E Y+ ++R    M ++    G A D Q   H E+  R L +N
Sbjct: 457 CYDEEFNPWKEAYEQLSRGVHVMKNLEQFVG-AADIQCFDHIEEALRFLDEN 507


>AC024755-3|AAL65801.1|  231|Caenorhabditis elegans Hypothetical
           protein Y34B4A.6 protein.
          Length = 231

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 14  FWRPCTEEEYLHWGEKYD 31
           FW  C + E  +WG  Y+
Sbjct: 192 FWNACKKPEMAYWGCNYE 209


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,906
Number of Sequences: 27539
Number of extensions: 55328
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 12,573,161
effective HSP length: 49
effective length of query: 20
effective length of database: 11,223,750
effective search space: 224475000
effective search space used: 224475000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)