GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001523-TA|BGIBMGA001523-PA|undefined
         (69 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   0.59 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   0.79 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   0.79 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   7.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   7.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 0.59
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 24  LHWGEKYDGVNRAKAYMDSVRARKG 48
           L W   YDG +  K Y+   +  KG
Sbjct: 894 LSWAAPYDGNSPIKRYVIEYKISKG 918


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 0.79
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 24   LHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHA 59
            LHW   ++G      Y    R   G   + QL +HA
Sbjct: 1422 LHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHA 1457


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 0.79
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 24   LHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHA 59
            LHW   ++G      Y    R   G   + QL +HA
Sbjct: 1418 LHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHA 1453


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 22  EYLHWGEKYDGVNRAKAYMDSV 43
           +Y  W E Y+G    K   D V
Sbjct: 430 QYTDWEEVYNGYIYQKMVADVV 451


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 22  EYLHWGEKYDGVNRAKAYMDSV 43
           +Y  W E Y+G    K   D V
Sbjct: 430 QYTDWEEVYNGYIYQKMVADVV 451


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,142
Number of Sequences: 429
Number of extensions: 588
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 69
length of database: 140,377
effective HSP length: 45
effective length of query: 24
effective length of database: 121,072
effective search space:  2905728
effective search space used:  2905728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)