GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001523-TA|BGIBMGA001523-PA|undefined
         (69 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    64   1e-11
At2g18780.1 68415.m02186 F-box family protein contains F-box dom...    27   1.5  
At1g11360.2 68414.m01305 universal stress protein (USP) family p...    26   2.7  
At1g11360.1 68414.m01304 universal stress protein (USP) family p...    26   2.7  
At3g62900.1 68416.m07066 expressed protein ; expression supporte...    25   4.7  
At3g55760.2 68416.m06196 expressed protein                             25   4.7  
At3g55760.1 68416.m06195 expressed protein                             25   4.7  
At3g27770.1 68416.m03465 expressed protein                             25   4.7  
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr...    25   4.7  
At1g69920.1 68414.m08046 glutathione S-transferase, putative sim...    25   4.7  
At1g75450.1 68414.m08764 FAD-binding domain-containing protein /...    25   6.2  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    25   8.2  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    25   8.2  
At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family pr...    25   8.2  
At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family pr...    25   8.2  

>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
            to eukaryotic translation elongation factor 2
            GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 30/68 (44%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 1    MLFSHWEVIDIDPFWRPCTEEEYLHWGEKYDGV-NRAKAYMDSVRARKGLATDKQLVQHA 59
            M+ SHWE+++ DPF+ P TEEE   +G+    + N A+  +++VR RKGL  ++++VQ+A
Sbjct: 946  MVLSHWEMLEEDPFFVPKTEEEIEEFGDGASVLPNTARKLINAVRRRKGLHVEEKVVQYA 1005

Query: 60   EKQRTLSK 67
             KQRTL++
Sbjct: 1006 TKQRTLAR 1013


>At2g18780.1 68415.m02186 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)

Query: 6   WEVIDIDPFWRPCTEEEYLHWGEKYDG 32
           WEV+D++P W    E +++H G   DG
Sbjct: 191 WEVLDVNPDW----EIDFVHRGLSIDG 213


>At1g11360.2 68414.m01305 universal stress protein (USP) family
           protein contains Pfam PF00582: universal stress protein
           family domain; similar to ethylene-responsive ER6
           protein (GI:5669654) [Lycopersicon esculentum]
          Length = 242

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 6   WEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKA 38
           W  +D+ P W P  EE      + +D V   KA
Sbjct: 84  WGAMDLSPQWDPNNEESQRKLEDDFDIVTNKKA 116


>At1g11360.1 68414.m01304 universal stress protein (USP) family
           protein contains Pfam PF00582: universal stress protein
           family domain; similar to ethylene-responsive ER6
           protein (GI:5669654) [Lycopersicon esculentum]
          Length = 242

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 6   WEVIDIDPFWRPCTEEEYLHWGEKYDGVNRAKA 38
           W  +D+ P W P  EE      + +D V   KA
Sbjct: 84  WGAMDLSPQWDPNNEESQRKLEDDFDIVTNKKA 116


>At3g62900.1 68416.m07066 expressed protein ; expression supported
           by MPSS
          Length = 1401

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 28  EKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQRTLS 66
           E Y+G  R +   D  R   GL   K L  H E  +T+S
Sbjct: 353 ENYNGTVRGEMVGDVDRRLWGLTRHKDLGAHHENPKTIS 391


>At3g55760.2 68416.m06196 expressed protein
          Length = 578

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 26  WGEKYDGVNRAKAYMD 41
           WGEKYDG   +  Y D
Sbjct: 455 WGEKYDGQGGSTKYTD 470


>At3g55760.1 68416.m06195 expressed protein
          Length = 578

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 26  WGEKYDGVNRAKAYMD 41
           WGEKYDG   +  Y D
Sbjct: 455 WGEKYDGQGGSTKYTD 470


>At3g27770.1 68416.m03465 expressed protein
          Length = 315

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 7  EVIDIDPFWRPCTEEEYLHW 26
          +V+ ID  WRPC E  +  W
Sbjct: 56 DVLCIDDVWRPCFERIHPGW 75


>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 456

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 10  DIDPFWRPCTEEEYLHWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQHAEKQRTLSK 67
           D DP  + C + E    G+K   ++  K Y+  VRAR+G ATD   +    ++  +S+
Sbjct: 230 DSDP--KRCKKSE--ENGDKTKSIDPYKDYIH-VRARRGQATDSHSLAERVRREKISE 282


>At1g69920.1 68414.m08046 glutathione S-transferase, putative
           similar to glutathione transferase GB:CAA09188
           [Alopecurus myosuroides]; supported by cDNA gi:15451157
           gb:AY050343.
          Length = 254

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 14  FWRPCTEEEYLHWGEKYDGVNRAKAYMDSV 43
           F RP T    + W EK+      K YM +V
Sbjct: 212 FLRPDTTPGLIQWAEKFRAHEAVKPYMPTV 241


>At1g75450.1 68414.m08764 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to GB:CAA77151
           from [Zea mays] [SP|Q9T0N8] (Plant J. 17 (6), 615-626
           (1999))
          Length = 540

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 19  TEEEYL-HWGEKYDGVNRAKAYMDSVRARKGLATDKQLVQH 58
           T+EE++ H+G+K+D     KA  D    R  LAT +++ Q+
Sbjct: 485 TQEEWVAHFGDKWDRFRSLKAEFD---PRHILATGQRIFQN 522


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 15  WRPCTEEEYLHWGEKY 30
           WR   E EYL W  K+
Sbjct: 562 WRELEENEYLEWSVKF 577


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 10   DIDPFWRPCT 19
            +IDPFW+ CT
Sbjct: 1011 EIDPFWKECT 1020


>At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;supported by cDNA
           gi|20127067|gb|AF488597.1|
          Length = 337

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 43  VRARKGLATDK-QLVQHAEKQRTLSKNK 69
           VRAR+G ATD+  L + A +++   K K
Sbjct: 185 VRARRGQATDRHSLAERARREKISKKMK 212


>At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;supported by cDNA
           gi|20127067|gb|AF488597.1|
          Length = 335

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 43  VRARKGLATDK-QLVQHAEKQRTLSKNK 69
           VRAR+G ATD+  L + A +++   K K
Sbjct: 185 VRARRGQATDRHSLAERARREKISKKMK 212


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,207
Number of Sequences: 28952
Number of extensions: 52932
Number of successful extensions: 161
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 15
length of query: 69
length of database: 12,070,560
effective HSP length: 49
effective length of query: 20
effective length of database: 10,651,912
effective search space: 213038240
effective search space used: 213038240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)