GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001521-TA|BGIBMGA001521-PA|undefined
         (66 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   0.26 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   0.60 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    18   7.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    18   7.4  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax
          protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 0.26
 Identities = 11/25 (44%), Positives = 12/25 (48%)

Query: 27 PYRNQHVVAAASTRYGTQVPSVGAR 51
          PY   HV   A+   G  VP VG R
Sbjct: 51 PYHANHVNPTANHVMGGAVPDVGKR 75


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 0.60
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 21  RVQSGRPYRNQHVVAAASTRYGTQVPSVG 49
           +V +G     QH+ A+ +  +  Q PS G
Sbjct: 100 QVNNGFATLRQHIPASVAAAFAPQGPSTG 128


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 18.2 bits (35), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 3   DLYRVNLK-FDERLWLTIIRVQSGRPY 28
           +LY V L  FD  LW++ + V+  + Y
Sbjct: 121 NLYMVLLLLFDAYLWISSVGVRMFQYY 147


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 18.2 bits (35), Expect = 7.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 23  QSGRPYRNQHVVAAASTRYGTQVP 46
           +S  P +    V   ST+ GT VP
Sbjct: 695 KSPSPQQRSPSVTDLSTKDGTTVP 718


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526
Number of Sequences: 317
Number of extensions: 531
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 66
length of database: 114,650
effective HSP length: 44
effective length of query: 22
effective length of database: 100,702
effective search space:  2215444
effective search space used:  2215444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)