GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001521-TA|BGIBMGA001521-PA|undefined
         (66 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   1.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   1.2  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    24   2.9  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    23   5.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    23   6.6  

>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 1   MPDLYRVNLKFDERLWLTIIRVQSGRPYRNQ 31
           +P+L ++NLK ++  W T  R +    +R+Q
Sbjct: 427 LPNLQQLNLKLEKTKWSTTRRDKGREMHRSQ 457


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 18  TIIRVQSGRPYRNQHVVAAASTRYGTQVPSVGARWNNYS 56
           T++ +Q G  Y N     A   RY T   S  + W  Y+
Sbjct: 859 TLLIMQDGDLYINHSAPGAVLFRYSTDFQSHWSDWEEYN 897


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/36 (33%), Positives = 14/36 (38%)

Query: 25  GRPYRNQHVVAAASTRYGTQVPSVGARWNNYSPAEP 60
           G+      VV  A    G +V S   RW NY    P
Sbjct: 103 GQAVEKNPVVVGAMEEAGCEVGSHSHRWINYEGVPP 138


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 7/24 (29%), Positives = 16/24 (66%)

Query: 31  QHVVAAASTRYGTQVPSVGARWNN 54
           +H+V+   ++YG +V  +  +WN+
Sbjct: 664 KHMVSLRGSKYGQKVAYLVEKWNS 687


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 18  TIIRVQSGRPYRNQHV 33
           T++RV  G+ Y  QHV
Sbjct: 719 TLLRVDYGKAYATQHV 734


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,002
Number of Sequences: 5004
Number of extensions: 9850
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 2,362,478
effective HSP length: 46
effective length of query: 20
effective length of database: 2,132,294
effective search space: 42645880
effective search space used: 42645880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)