GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001521-TA|BGIBMGA001521-PA|undefined
         (66 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218...    26   4.3  
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279...    25   5.7  
03_05_0677 + 26663880-26664581                                         25   7.6  

>03_06_0003 +
           30921197-30921388,30921514-30921632,30921742-30921811,
           30922078-30922161,30922258-30922344,30922431-30922501,
           30922648-30922702,30923374-30923509,30925009-30925103,
           30925203-30925357,30925435-30925543,30925761-30925817,
           30925913-30926027,30926177-30926264,30926738-30927501,
           30927600-30927688,30928315-30928422,30928550-30928657,
           30928887-30928977,30929235-30929287,30929557-30929712,
           30930763-30930825,30931491-30931535,30932075-30932130,
           30933051-30933132,30933238-30933354,30933428-30933530,
           30933912-30934062,30934180-30934417,30934564-30934764,
           30934850-30934935,30935036-30935135
          Length = 1347

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 51  RWNNYSPAEPSGATC 65
           RW  +SPAEP+  TC
Sbjct: 434 RWLGHSPAEPAFVTC 448


>06_02_0060 -
          11026885-11026929,11027732-11027756,11027886-11027992,
          11028023-11028103,11028301-11028405,11031495-11031762,
          11031854-11032056
          Length = 277

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 35 AAASTRYGTQVPSVGARWNNYSPAEPSGAT 64
          AA +   G   PS+ A WN+Y+ + P  ++
Sbjct: 14 AAPAASAGESQPSLLADWNSYAASRPDASS 43


>03_05_0677 + 26663880-26664581
          Length = 233

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 42  GTQVPSVGARWNNYS 56
           GT VP   ARW NY+
Sbjct: 132 GTGVPLANARWGNYA 146


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,009
Number of Sequences: 37544
Number of extensions: 74406
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 4
length of query: 66
length of database: 14,793,348
effective HSP length: 46
effective length of query: 20
effective length of database: 13,066,324
effective search space: 261326480
effective search space used: 261326480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)