GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001521-TA|BGIBMGA001521-PA|undefined
         (66 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32988| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-25)            26   3.7  
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.9  
SB_42484| Best HMM Match : Sulfate_transp (HMM E-Value=0.00024)        25   6.5  
SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)                 25   8.6  

>SB_32988| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-25)
          Length = 180

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 25  GRPYRNQHVVAAASTRYGTQVPSVGARWNNYSPAEPSG 62
           G+PY + ++V    TRY       G  W  Y P E SG
Sbjct: 101 GKPYSSYYLVDHWVTRYALSYSLDGITWTTY-PHEFSG 137


>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 5   YRVNLKFDERLWLTIIRVQSGRPYRNQHVVAAASTRYGTQVP 46
           +++  K  + +  T   ++   P++  H +  +++ YG+ VP
Sbjct: 422 HKMGPKTKQNIQYTTANIEPASPFQRNHSMRTSTSSYGSTVP 463


>SB_42484| Best HMM Match : Sulfate_transp (HMM E-Value=0.00024)
          Length = 349

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 17  LTIIRVQSGRPYRNQHVVAAASTRYGTQ 44
           L + RV +GRP R + V+      YG +
Sbjct: 257 LRVERVSTGRPLRVERVILGTGITYGAE 284


>SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)
          Length = 366

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 6   RVNLKFDERLWLTIIRVQSGRPY 28
           + N+ FD  +WL+   V  GR Y
Sbjct: 186 KFNMSFDNEVWLSNTSVSPGRMY 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.133    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,990
Number of Sequences: 59808
Number of extensions: 79333
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 16,821,457
effective HSP length: 45
effective length of query: 21
effective length of database: 14,130,097
effective search space: 296732037
effective search space used: 296732037
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)