GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001521-TA|BGIBMGA001521-PA|undefined
         (66 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022786-1|AAY55202.1|  308|Drosophila melanogaster IP12338p pro...    27   4.3  
AE014297-3545|AAF56296.1|  429|Drosophila melanogaster CG17781-P...    27   4.3  
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me...    25   9.8  
M19537-1|AAA28827.1|  408|Drosophila melanogaster RNA polymerase...    25   9.8  
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro...    25   9.8  
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA...    25   9.8  

>BT022786-1|AAY55202.1|  308|Drosophila melanogaster IP12338p
           protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 2   PDLYRVNLKFDERLWLTIIRVQSGRPYRNQHVVAAASTRYGTQVPSVGARWN-NYSPAE 59
           P  Y  N       +  I R+ +  PY N +  A A+        ++ A W+   SPAE
Sbjct: 180 PPAYAANEHDSHSYYTNIQRIPAAYPYANANANADANANGQQSQAAIPANWHARQSPAE 238


>AE014297-3545|AAF56296.1|  429|Drosophila melanogaster CG17781-PA
           protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 2   PDLYRVNLKFDERLWLTIIRVQSGRPYRNQHVVAAASTRYGTQVPSVGARWN-NYSPAE 59
           P  Y  N       +  I R+ +  PY N +  A A+        ++ A W+   SPAE
Sbjct: 180 PPAYAANEHDSHSYYTNIQRIPAAYPYANANANADANANGQQSQAAIPANWHARQSPAE 238


>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
            D.melanogaster RpII215gene encoding RNA polymerase II,
            largest subunit, completecds. ).
          Length = 1896

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 30   NQHVVAAASTRYGTQVPSVGARWNNYSPAEP 60
            N  + + +ST+Y    P+      NYSP  P
Sbjct: 1830 NMSIYSPSSTKYSPTSPTYTPTARNYSPTSP 1860


>M19537-1|AAA28827.1|  408|Drosophila melanogaster RNA polymerase II
           largest subunit protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 30  NQHVVAAASTRYGTQVPSVGARWNNYSPAEP 60
           N  + + +ST+Y    P+      NYSP  P
Sbjct: 349 NMSIYSPSSTKYSPTSPTYTPTARNYSPTSP 379


>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
          Length = 1429

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 30   NQHVVAAASTRYGTQVPSVGARWNNYSPAEP 60
            N  + + +ST+Y    P+      NYSP  P
Sbjct: 1370 NMSIYSPSSTKYSPTSPTYTPTARNYSPTSP 1400


>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
            protein.
          Length = 1887

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 30   NQHVVAAASTRYGTQVPSVGARWNNYSPAEP 60
            N  + + +ST+Y    P+      NYSP  P
Sbjct: 1828 NMSIYSPSSTKYSPTSPTYTPTARNYSPTSP 1858


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.133    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,582,089
Number of Sequences: 52641
Number of extensions: 116101
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 14
length of query: 66
length of database: 24,830,863
effective HSP length: 46
effective length of query: 20
effective length of database: 22,409,377
effective search space: 448187540
effective search space used: 448187540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)