GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001521-TA|BGIBMGA001521-PA|undefined
         (66 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    25   6.6  

>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 42  GTQVPSVGARWNNYSPAEPSGATC 65
           GT +PS GA++    P   +G TC
Sbjct: 86  GTCIPSFGAKFTCLCPPHFTGTTC 109


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 42  GTQVPSVGARWNNYSPAEPSGATC 65
           GT +PS GA++    P   +G TC
Sbjct: 86  GTCIPSFGAKFTCLCPPHFTGTTC 109


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,363
Number of Sequences: 27539
Number of extensions: 55266
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 2
length of query: 66
length of database: 12,573,161
effective HSP length: 46
effective length of query: 20
effective length of database: 11,306,367
effective search space: 226127340
effective search space used: 226127340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)