GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001521-TA|BGIBMGA001521-PA|undefined
         (66 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   0.31 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   0.72 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   0.72 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   3.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   5.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    19   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          18   8.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      18   8.9  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      18   8.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 0.31
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 28  YRNQHVVAAASTRYGTQVPSVGARWNNYSPAE 59
           Y NQ+ + A+S+R G+++ S     + + P E
Sbjct: 640 YENQNCLDASSSRRGSKIGSPTPAESTFIPEE 671


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 0.72
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 1    MPDLYRVNLKFDERLWLTIIRVQSG-RPYRNQHVVAAASTRYGTQVPS 47
            + D++R   + + R    +  V +G R Y N  +   A TR G  VP+
Sbjct: 1155 LADMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPT 1202


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 0.72
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 1    MPDLYRVNLKFDERLWLTIIRVQSG-RPYRNQHVVAAASTRYGTQVPS 47
            + D++R   + + R    +  V +G R Y N  +   A TR G  VP+
Sbjct: 1151 LADMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPT 1198


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.4 bits (38), Expect = 3.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 35  AAASTRYGTQVPSVGARWNNYSPAEPSGAT 64
           AA++T  G   PS     +N + A  +G T
Sbjct: 230 AASATGTGPATPSAVVATSNATAAMTTGTT 259


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 10  KFDERLWLTIIRV 22
           K + R+WLTI+ V
Sbjct: 298 KNNRRVWLTILLV 310


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 25 GRPYRNQHVVAAASTRYGTQVPSVGARWN 53
          G   + Q  + +    Y   VP    RWN
Sbjct: 46 GSDEKRQAAIQSGEYNYKNNVPIDVDRWN 74


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 56  SPAEPSGATC 65
           SPA P G+ C
Sbjct: 275 SPATPKGSKC 284


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 51 RWNNY 55
          RWNNY
Sbjct: 14 RWNNY 18


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 51 RWNNY 55
          RWNNY
Sbjct: 10 RWNNY 14


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 51 RWNNY 55
          RWNNY
Sbjct: 10 RWNNY 14


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,842
Number of Sequences: 429
Number of extensions: 842
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 66
length of database: 140,377
effective HSP length: 44
effective length of query: 22
effective length of database: 121,501
effective search space:  2673022
effective search space used:  2673022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)