GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001521-TA|BGIBMGA001521-PA|undefined
         (66 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28660.1 68415.m03484 copper-binding family protein similar t...    27   1.5  
At1g58220.1 68414.m06612 myb family transcription factor contain...    27   2.0  
At5g18680.1 68418.m02217 F-box family protein / tubby family pro...    26   2.7  
At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein si...    25   8.2  

>At2g28660.1 68415.m03484 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 265

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 8   NLKFDER-LWLTIIRVQSGRPYRNQHVVAAASTRYGTQVPSVGARWNNYSPAEPS 61
           +LK D++ LWL+  R +    YR+++V ++AS+   +   S  +   N S   PS
Sbjct: 125 SLKGDDKDLWLSSDRSKDLILYRDRNVTSSASSSSSSSSSSFSSSVTNVSSPAPS 179


>At1g58220.1 68414.m06612 myb family transcription factor contains
           Pfam profile: PF00249: Myb-like DNA-binding domain
          Length = 834

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 34  VAAASTRYGTQVPSVGARWNNYSPAEPS 61
           V AA+T    Q PSVGA  N  +P +PS
Sbjct: 678 VGAAATVVTPQKPSVGAAANVVTPQKPS 705


>At5g18680.1 68418.m02217 F-box family protein / tubby family
          protein similar to phosphodiesterase (GI:467578) [Mus
          musculus]; similar to Chain A, C-Terminal Domain Of
          Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
          contains Pfam PF00646: F-box domain and Pfam PF01167:
          Tub family
          Length = 389

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 18 TIIRVQSGRPYRNQHVVAAASTRYGTQVPSVGARWN 53
          ++I     RP+R  H +AAA+    T V S   RW+
Sbjct: 5  SLILEMRSRPHRVVHDLAAAAAADSTSVSSQDYRWS 40


>At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 562

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 15  LWLTIIRVQSGRPYRNQHVVAAASTRYGTQVPSV 48
           +WLT I + S   +R+Q +      R G   PSV
Sbjct: 435 IWLTEIDISSSLDHRSQAIYLEQVLREGFSHPSV 468


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.133    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,363
Number of Sequences: 28952
Number of extensions: 50619
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 12,070,560
effective HSP length: 46
effective length of query: 20
effective length of database: 10,738,768
effective search space: 214775360
effective search space used: 214775360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)